CBC-Funded Publications 2017

Updated: November 13, 2017

The CBC is proud to announce that over 1900 publications have been attributed to CBC funding! The countdown to reach 2000 is on! The winning publication will be featured on the CBC homepage and the CBC awardee(s) will receive a surprise gift to commemorate the occasion! The current number to reach 2000 is:

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2017

Allen S, Osorio O, Liu YG, Scott E. Facile assembly and loading of theranostic polymersomes via multi-impingement flash nanoprecipitation. J Control Release. 2017 Jul 20;262:91-103. (PubMed)

Almassalha LM, Bauer GM, Wu W, Cherkezyan L, Zhang D, Kendra A, Gladstein S, Chandler JE, VanDerway D, Seagle BLL, Ugolkov A, Billadeau DD, O’Halloran TV, Mazar AP, Roy HK, Szleifer I, Shahabi S, Backman V. Macrogenomic engineering via modulation of the scaling of chromatin packing density. Nature Biomedical Engineering (2017). Published online: 06 November 2017. [Epub ahead of print] (www.nature.com)

Almassalha LM, Tiwari A, Ruhoff PT, Stypula-Cyrus Y, Cherkezyan L, Matsuda H, Dela Cruz MA, Chandler JE, White C, Maneval C, Subramanian H, Szleifer I, Roy HK, Backman V. The Global Relationship between Chromatin Physical Topology, Fractal Structure, and Gene Expression. Sci Rep. 2017 Jan 24;7:41061. (PubMed)

Anderson LC, DeHart CJ, Kaiser NK, Fellers RT, Smith DF, Greer JB, LeDuc RD, Blakney GT, Thomas PM, Kelleher NL, Hendrickson CL. Identification and Characterization of Human Proteoforms by Top-Down LC-21 Tesla FT-ICR Mass Spectrometry. J Proteome Res. 2017 Feb 3;16(2):1087-1096. (PubMed)

Aprison EZ, Ruvinsky I. Counteracting Ascarosides Act through Distinct Neurons to Determine the Sexual Identity of C. elegans Pheromones. Curr Biol. Sep 11;27(17):2589-2599.e3. (PubMed)

Arenas OM, Zaharieva EE, Para A, Vásquez-Doorman C, Petersen CP, Gallio M. Activation of planarian TRPA1 by reactive oxygen species reveals a conserved mechanism for animal nociception. Nature Neuroscience (2017). Published online: 16 October 2017. [Epub ahead of print] (www.nature.com)

Banga RJ, Krovi SA, Narayan SP, Sprangers AJ, Liu G, Mirkin CA, Nguyen ST. Drug-Loaded Polymeric Spherical Nucleic Acids: Enhancing Colloidal Stability and Cellular Uptake of Polymeric Nanoparticles through DNA Surface-Functionalization. Biomacromolecules. 2017 Feb 13;18(2):483-489. (PubMed)

Barefield DY, Puckelwartz MJ, Kim EY, Wilsbacher LD, Vo AH, Waters EA, Earley JU, Hadhazy M, Dellefave-Castillo LM, Pesce LL, McNally EM. Experimental Modeling Supports a Role for MyBP-HL as a Novel Myofilament Component in Arrhythmia and Dilated Cardiomyopathy. Circulation. 2017 Oct 17;136(16):1477-1491. (PubMed)

Basak SC, Mishra RK. Editorial: Descriptor Spaces for QSAR: Delving into the History of the Expanding Frontier. Curr Comput Aided Drug Des. 2017;13(1):4-7. (PubMed)

Basu A, Komazin-Meredith G, McCarthy C, Antanasijevic A, Cardinale SC, Mishra RK, Barnard DL, Caffrey M, Rong L, Bowlin TL. Molecular Mechanism Underlying the Action of Influenza A Virus Fusion Inhibitor MBX2546. ACS Infect Dis. 2017 May 12;3(5):330-335. (PubMed)

Baumgarten SC, Armouti M, Ko C, Stocco C. IGF1R Expression in Ovarian Granulosa Cells is Essential for Steroidogenesis, Follicle Survival, and Fertility in Female Mice. Endocrinology. 2017 Jul 1;158(7):2309-2318. (PubMed)

Beck M, Kathayat R, Cham C, Chang E, Dickinson B. Michael addition-based probes for ratiometric fluorescence imaging of protein S-depalmitoylases in live cells and tissues. Chem. Sci. Published on 11 September 2017. (pubs.rsc.org)

Belaghzal H, Dekker J, Gibcus JH. Hi-C 2.0: An optimized Hi-C procedure for high-resolution genome-wide mapping of chromosome conformation. Methods. 2017 Jul 1;123:56-65. (PubMed)

Biancucci M, Dolores JS, Wong J, Grimshaw S, Anderson WF, Satchell KJ, Kwon K. New ligation independent cloning vectors for expression of recombinant proteins with a self-cleaving CPD/6xHis-tag. BMC Biotechnol. 2017 Jan 5;17(1):1. (PubMed)

Bondoc JMG, Wolf NM, Ndichuck M, Abad-Zapatero C, Movahedzadeh F. Mutagenesis of threonine to serine in the active site of Mycobacterium tuberculosis fructose-1,6-bisphosphatase (Class II) retains partial enzyme activity. Biotechnol Rep (Amst). 2017 Jun 15;15:48-54. eCollection 2017 Sep. (PubMed)

Brahmachari S, Marko JF. Torque and buckling in stretched intertwined double-helix DNAs. Phys Rev E. 2017 May;95(5-1):052401. (PubMed)

Bristow G, Nwabuisi-Heath E, Dong E, Guidotti A, Sodhi M. Altered RNA Editing and Behavior in Prenatally Stressed Mice are Reversed by Clozapine. Biological Psychiatry. 15 May 2017 vol. 81:10 Supplement:S3. (sciencedirect.com)

Bristow G, Sodhi M. AMPA receptor RNA editing may alleviate the long-term effects of prenatal stress. The FASEB Journal. April 2017 vol. 31 no. 1 Supplement 988.7. (fasebj.org)

Broussard JA, Yang R, Huang C, Nathamgari SSP, Beese AM, Godsel LM, Hegazy MH, Lee S, Zhou F, Sniadecki NJ, Green KJ, Espinosa HD. The desmoplakin/intermediate filament linkage regulates cell mechanics. Mol Biol Cell. 2017 May 11. [Epub ahead of print] (PubMed)

Calik MW, Carley DW. Co-Localization of Serotonin and Cannabinoid Receptors in the Nodose Ganglia. Sleep (2017) 40 (suppl_1): A52. (academic.oup.com)

Calvert AE, Chalastanis A, Wu Y, Hurley LA, Kouri FM, Bi Y, Kachman M, May JL, Bartom E, Hua Y, Mishra RK, Schiltz GE, Dubrovskyi O, Mazar AP, Peter ME, Zheng H, James CD, Burant CF, Chandel NS, Davuluri RV, Horbinski C, Stegh AH. Cancer-Associated IDH1 Promotes Growth and Resistance to Targeted Therapies in the Absence of Mutation. Cell Rep. 2017 May 30;19(9):1858-1873. (PubMed)

Chandler JE, Stypula-Cyrus Y, Almassalha L, Bauer G, Bowen L, Subramanian H, Szleifer I, Backman V. Colocalization of cellular nanostructure using confocal fluorescence and partial wave spectroscopy. J Biophotonics. 2017 Mar;10(3):377-384. (PubMed)

Chen PC, Du JS, Meckes B, Huang L, Xie Z, Hedrick JL, Dravid VP, Mirkin CA. Structural Evolution of Three-Component Nanoparticles in Polymer Nanoreactors. J Am Chem Soc. 2017 Jul 26;139(29):9876-9884. (PubMed)

Chen R, Davis LK, Guter S, Wei Q, Jacob S, Potter MH, Cox NJ, Cook EH, Sutcliffe JS, Li B. Leveraging blood serotonin as an endophenotype to identify de novo and rare variants involved in autism. Mol Autism. 2017 Mar 21;8:14. eCollection 2017. (PubMed)

Cheng J, Demeulemeester J, Wedge DC, Vollan HKM, Pitt JJ, Russnes HG, Pandey BP, Nilsen G, Nord S, Bignell GR, White KP, Børresen-Dale AL, Campbell PJ, Kristensen VN, Stratton MR, Lingjærde OC, Moreau Y, Loo PV. Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors. Nat Commun. 2017 Oct 31;8(1):1221. (PubMed)

Chen Z, Notti RQ, Ueberheide BM, Ruthenburg AJ. Quantitative and structural assessment of histone methyllysine analog engagement by cognate binding proteins reveals affinity decrements relative to native counterparts. Biochemistry. 2017 Nov 7. [Epub ahead of print] (PubMed)

Cherkezyan L, Zhang D, Subramanian H, Capoglu I, Taflove A, Backman V. Review of interferometric spectroscopy of scattered light for the quantification of subdiffractional structure of biomaterials. J Biomed Opt. 2017 Mar 1;22(3):30901. (PubMed)

Chhibber A, French CE, Yee SW, Gamazon ER, Theusch E, Qin X, Webb A, Papp AC, Wang A, Simmons CQ, Konkashbaev A, Chaudhry AS, Mitchel K, Stryke D, Ferrin TE, Weiss ST, Kroetz DL, Sadee W, Nickerson DA, Krauss RM, George AL, Schuetz EG, Medina MW, Cox NJ, Scherer SE, Giacomini KM, Brenner SE. Transcriptomic variation of pharmacogenes in multiple human tissues and lymphoblastoid cell lines. Pharmacogenomics J. 2017 Mar;17(2):137-145. (PubMed)

Chinen AB, Guan CM, Ko CH, Mirkin CA. The Impact of Protein Corona Formation on the Macrophage Cellular Uptake and Biodistribution of Spherical Nucleic Acids. Small. 2017 Apr;13(16). (PubMed)

Cho S, Chlipala G, Green S, Lee H, Jeong H. Differential gut microbiota modulates the susceptibility to acetaminophen-induced hepatotoxicity. The FASEB Journal. April 2017 vol. 31 no. 1 Supplement 668.11. (fasebj.org)

Cho S, Tripathi A, Chlipala G, Green S, Lee H, Chang EB, Jeong H. Fructose diet alleviates acetaminophen-induced hepatotoxicity in mice. PLoS ONE. 2017 Aug 23;12(8):e0182977. eCollection 2017. (PubMed)

Ciryam P, Lambert-Smith IA, Bean DM, Freer R, Cid F, Tartaglia GG, Saunders DN, Wilson MR, Oliver SG, Morimoto RI, Dobson CM, Vendruscolo M, Favrin G, Yerbury JJ. Spinal motor neuron protein supersaturation patterns are associated with inclusion body formation in ALS. Proc Natl Acad Sci U S A. 2017 May 16;114(20):E3935-E3943. (PubMed)

Cleland TP, DeHart CJ, Fellers RT, VanNispen AJ, Greer JB, LeDuc RD, Parker WR, Thomas PM, Kelleher NL, Brodbelt JS. High-Throughput Analysis of Intact Human Proteins Using UVPD and HCD on an Orbitrap Mass Spectrometer. J Proteome Res. 2017 May 5;16(5):2072-2079. (PubMed)

Clevenger KD, Bok JW, Ye R, Miley GP, Verdan MH, Velk T, Chen C, Yang K, Robey MT, Gao P, Lamprecht M, Thomas PM, Islam MN, Palmer JM, Wu CC, Keller NP, Kelleher NL. A scalable platform to identify fungal secondary metabolites and their gene clusters. Nat Chem Biol. 2017 Aug;13(8):895-901. (PubMed)

Clevenger KD, Mascarenhas R, Catlin D, Wu R, Kelleher NL, Drake EJ, Gulick AM, Liu D, Fast W. Substrate Trapping in the Siderophore Tailoring Enzyme PvdQ. ACS Chem Biol. 2017 Mar 17;12(3):643-647. (PubMed)

Cybulski TR, Boyden ES, Church GM, Tyo KEJ, Kording KP. Nucleotide-time alignment for molecular recorders. PLoS Comput Biol. 2017 May 1;13(5):e1005483. eCollection 2017 May. (PubMed)

Czyż DM, Willett J, Crosson S. Brucella abortus induces a Warburg shift in host metabolism that enhances intracellular replication of the pathogen. J Bacteriol. 2017 Jul 11;199(15). (PubMed)

D’Auria L, Reiter C, Ward E, Moyano AL, Marshall MS, Nguyen D, Scesa G, Hauck Z, van Breemen R, Givogri MI, Bongarzone ER. Psychosine enhances the shedding of membrane microvesicles: Implications in demyelination in Krabbe’s disease. PLoS One. 2017 May 22;12(5):e0178103. eCollection 2017. (PubMed)

Dai Q, Moshitch-Moshkovitz S, Han D, Kol N, Amariglio N, Rechavi G, Dominissini D, He C. Nm-seq maps 2′-O-methylation sites in human mRNA with base precision. Nat Methods. 2017 Jul;14(7):695-698. (PubMed)

Davis-Roca AC, Muscat CC, Wignall SM. Caenorhabditis elegans oocytes detect meiotic errors in the absence of canonical end-on kinetochore attachments. J Cell Biol. 2017 May 1;216(5):1243-1253. (PubMed)

DeBerge M, Yeap XY, Dehn S, Zhang S, Grigoryeva LS, Misener S, Procissi D, Zhou X, Lee DC, Muller WA, Luo X, Rothlin C, Tabas I, Thorp EB. MerTK Cleavage on Resident Cardiac Macrophages Compromises Repair after Myocardial Ischemia Reperfusion Injury. Circ Res. 2017 Sep 29;121(8):930-940. [Epub ahead of print] (PubMed)

DeBerge M, Shuang Zhang S, Glinton K, Grigoryeva L, Hussein I, Vorovich E, Ho K, Luo X, B. Thorp EB. Efferocytosis and Outside-In Signaling by Cardiac Phagocytes. Links to Repair, Cellular Programming, and Intercellular Crosstalk in Heart. Front. Immunol. 01 November 2017. (www.frontiersin.org)

DeHart CJ, Fellers RT, Fornelli L, Kelleher NL, Thomas PM. Bioinformatics Analysis of Top-Down Mass Spectrometry Data with ProSight Lite. Methods Mol Biol. 2017;1558:381-394. (PubMed)

Deibler KK, Mishra RK, Clutter MR, Antanasijevic A, Bergan R, Caffrey M, Scheidt KA. A Chemical Probe Strategy for Interrogating Inhibitor Selectivity Across the MEK kinase Family. ACS Chem Biol. 2017 May 19;12(5):1245-1256. (PubMed)

Dolan ME, El Charif O, Wheeler HE, Gamazon ER, Ardeshir-Rouhani-Fard S, Monahan P, Feldman DR, Hamilton RJ, Vaughn DJ, Beard CJ, Fung C, Kim J, Fossa SD, Hertz DL, Mushiroda T, Kubo M, Einhorn LH, Cox NJ, Travis LB; Platinum Study Group. Clinical and Genome-Wide Analysis of Cisplatin-Induced Peripheral Neuropathy in Survivors of Adult-Onset Cancer. Clin Cancer Res. 2017 Oct 1;23(19):5757-5768. (PubMed)

Du JS, Chen PC, Meckes B, Xie Z, Zhu J, Liu Y, Dravid VP, Mirkin CA. The Structural Fate of Individual Multicomponent Metal-Oxide Nanoparticles in Polymer Nanoreactors. Angew Chem Int Ed Engl. 2017 Jun 19;56(26):7625-7629. (PubMed)

du Lac M, Scarpelli AH, Younger AK, Bates DG, Leonard JN. Predicting the Dynamics and Heterogeneity of Genomic DNA Content within Bacterial Populations across Variable Growth Regimes. ACS Synth Biol. 2017 Jul 21;6(7):1131-1139. (PubMed)

Dumanian ZP, Tollemar V, Ye J, Lu M, Zhu Y, Liao J, Ameer GA, He TC, Reid RR. Repair of critical sized cranial defects with BMP9-transduced calvarial cells delivered in a thermoresponsive scaffold. PLoS One. 2017 Mar 1;12(3):e0172327. (PubMed)

Erclik T, Li X, Courgeon M, Bertet C, Chen Z, Baumert R, Ng J, Koo C, Arain U, Behnia R, del Valle Rodriguez A, Senderowicz L, Negre N, White KP, Desplan C. Integration of temporal and spatial patterning generates neural diversity. Nature. 2017 Jan 19;541(7637):365-370. (PubMed)

Eren M, Place AT, Thomas PM, Flevaris P, Miyata T, Vaughan DE. PAI-1 is a critical regulator of FGF23 homeostasis. Sci Adv. 2017 Sep 13;3(9):e1603259. eCollection 2017 Sep. (PubMed)

Ezponda T, Dupéré-Richer D, Will CM, Small EC, Varghese N, Patel T, Nabet B, Popovic R, Oyer J, Bulic M, Zheng Y, Huang X, Shah MY, Maji S, Riva A, Occhionorelli M, Tonon G, Kelleher N, Keats J, Licht JD. UTX/KDM6A Loss Enhances the Malignant Phenotype of Multiple Myeloma and Sensitizes Cells to EZH2 inhibition. Cell Rep. 2017 Oct 17;21(3):628-640. (PubMed)

Foote PK, Krist DT, Statsyuk AV. High-Throughput Screening of HECT E3 Ubiquitin Ligases Using UbFluor. Curr Protoc Chem Biol. 2017 Sep 14;9(3):174-195. (PubMed)

Fornelli L, Durbin KR, Fellers RT, Early BP, Greer JB, LeDuc RD, Compton PD, Kelleher NL. Advancing Top-down Analysis of the Human Proteome Using a Benchtop Quadrupole-Orbitrap Mass Spectrometer. J Proteome Res. 2017 Feb 3;16(2):609-618. (PubMed)

Fornelli L, Toby TK, Schachner LF, Doubleday PF, Srzentić K, DeHart CJ, Kelleher NL. Top-down proteomics: Where we are, where we are going? J Proteomics. 2017 Feb 7. [Epub ahead of print] (PubMed)

Gallik KL, Treffy RW, Nacke LM, Ahsan K, Rocha M, Green-Saxena A, Saxena A. Neural crest and cancer: Divergent travelers on similar paths. Mech Dev. 2017 Sep 6. Review. [Epub ahead of print] (PubMed)

Gan R, Perez JG, Carlson ED, Ntai I, Isaacs FJ, Kelleher NL, Jewett MC. Translation system engineering in Escherichia coli enhances non-canonical amino acid incorporation into proteins. Biotechnol Bioeng. 2017 May;114(5):1074-1086. (PubMed)

Gatto RG, Li W, Morfini GA, Magin RL. Diffusion Tensor Imaging Studies Identify Presymptomatic Axonal Degeneration in the Spinal Cord of an ALS Mouse Model. In: ISMRM 25th Annual Meeting & Exhibition. 2017 Jan 22. (researchgate.net)

Gebhardt MJ, Jacobson RK, Shuman HA. Seeing red; the development of pON.mCherry, a broad-host range constitutive expression plasmid for Gram-negative bacteria. PLoS One. 2017 Mar 3;12(3):e0173116. eCollection 2017. (PubMed)

Gebhardt MJ, Shuman HA. GigA and GigB are Master Regulators of Antibiotic Resistance, Stress Responses and Virulence in Acinetobacter baumannii. J Bacteriol. 2017 Apr 25;199(10). (PubMed)

Geeleher P, Huang RS. Exploring the Link between the Germline and Somatic Genome in Cancer. Cancer Discov. 2017 Apr;7(4):354-355. (PubMed)

Geeleher P, Zhang Z, Wang F, Gruener RF, Nath A, Morrison G, Bhutra S, Grossman RL, Huang RS. Discovering novel pharmacogenomic biomarkers by imputing drug response in cancer patients from large genomics studies. Genome Res. 2017 Oct;27(10):1743-1751. (PubMed)

Goering AW, Li J, McClure RA, Thomson RJ, Jewett MC, Kelleher NL. In vitro Reconstruction of Nonribosomal Peptide Biosynthesis Directly from DNA Using Cell-Free Protein Synthesis. ACS Synth Biol. 2017 Jan 20;6(1):39-44. (PubMed)

Gorman KT, Roby LC, Giuffre A, Huang R, Kay BK. Tandem phage-display for the identification of non-overlapping binding pairs of recombinant affinity reagents. Nucleic Acids Res. 2017 Oct 13;45(18):e158. (PubMed)

Greer SM, Holden DD, Fellers R, Kelleher NL, Brodbelt JS. Modulation of Protein Fragmentation Through Carbamylation of Primary Amines. J Am Soc Mass Spectrom. 2017 Aug;28(8):1587-1599. (PubMed)

Grigera F, Wuerffel R, Kenter AL. MBD4 facilitates immunoglobulin class switch recombination. Mol Cell Biol. 2017 Jan 4;37(2). (PubMed)

Grossman RL, Abel B, Angiuoli S, (…) Leiman LC. Collaborating to Compete: Blood Profiling Atlas in Cancer (BloodPAC) Consortium. Clin Pharmacol Ther. 2017 May;101(5):589-592. Review. (PubMed)

Guerrier S, Plattner H, Richardson EH, Dacks JB, Turkewitz AP. An evolutionary balance: conservation vs. innovation in ciliate membrane trafficking. Traffic. 2017 Jan;18(1):18-28. Review. (PubMed)

Gunn KH, Marko JF, Mondragón A. An orthogonal single-molecule experiment reveals multiple-attempt dynamics of type IA topoisomerases. Nat Struct Mol Biol. 2017 May;24(5):484-490. (PubMed)

Guo Y, Cho S, Chung E, Park JS, Jeong H. Structural differences in gut microbiota lead to altered hepatic expression of Drug Disposition Genes (DDG) in mice. The FASEB Journal. April 2017 vol. 31 no. 1 Supplement 668.3. (fasebj.org)

Gürsoy G, Xu Y, Kenter AL, Liang J. Computational construction of 3D chromatin ensembles and prediction of functional interactions of alpha-globin locus from 5C data. 2017. Nucleic Acids Res. 2017 Sep 15. [Epub ahead of print] (PubMed)

Gürsoy G, Xu Y, Liang J. Spatial organization of the budding yeast genome in the cell nucleus and identification of specific chromatin interactions from multi-chromosome constrained chromatin model. PLoS Comput Biol. 2017 Jul 13;13(7):e1005658. eCollection 2017 Jul. (PubMed)

Han Y, Heuermann RJ, Lyman KA, Fisher D, Ismail Q-A, Chetkovich DM. HCN-channel dendritic targeting requires bipartite interaction with TRIP8b and regulates antidepressant-like behavioral effects. Mol Psychiatry. 2017 Mar;22(3):458-465. (PubMed)

Han Y, Yan C, Nguyen THD, Jackobel AJ, Ivanov I, Knutson BA, He Y. Structural mechanism of ATP-independent transcription initiation by RNA polymerase I. Elife. 2017 Jun 17;6. (PubMed)

Haverland NA, Skinner OS, Fellers RT, Tariq AA, Early BP, LeDuc RD, Fornelli L, Compton PD, Kelleher NL. Defining Gas-Phase Fragmentation Propensities of Intact Proteins During Native Top-Down Mass Spectrometry. J Am Soc Mass Spectrom. 2017 Jun;28(6):1203-1215. (PubMed)

Haverland NA, Waas M, Ntai I, Keppel T, Gundry RL, Kelleher NL. Cell Surface Proteomics of N-Linked Glycoproteins for Typing of Human Lymphocytes. Proteomics. Proteomics. 2017 Oct;17(19). (PubMed)

Henry CS, Rotman E, Lathem WW, Tyo KE, Hauser AR, Mandel MJ. Generation and Validation of the iKp1289 Metabolic Model for Klebsiella pneumoniae KPPR1. J Infect Dis. 2017 Feb 15;215(suppl_1):S37-S43. (PubMed)

Hickox AE, Wong AC, Pak K, Strojny C, Ramirez M, Yates JR Rd, Ryan AF, Savas JN. Global Analysis of Protein Expression of Inner Ear Hair Cells. J Neurosci. 2017 Feb 1;37(5):1320-1339. (PubMed)

Hui E, Cheung J, Zhu J, Su X, Taylor MJ, Wallweber HA, Sasmal DK, Huang J, Kim JM, Mellman I, Vale RD. T cell costimulatory receptor CD28 is a primary target for PD-1-mediated inhibition. Science. 2017 Mar 31;355(6332):1428-1433. (PubMed)

Hung AH, Lilley LM, Hu F, Harrison VS, Meade TJ. Magnetic barcode imaging for contrast agents. Magn Reson Med. 2017 Mar;77(3):970-978. (PubMed)

Ichikawa Y, Connelly CF, Appleboim A, Miller TC, Jacobi H, Abshiru NA, Chou HJ, Chen Y, Sharma U, Zheng Y, Thomas PM, Chen HV, Bajaj V, Müller CW, Kelleher NL, Friedman N, Bolon DN, Rando OJ, Kaufman PD. A synthetic biology approach to probing nucleosome symmetry. Elife. 2017 Sep 12;6. (PubMed)

Jablonski RP, Kim SJ, Cheresh P, Williams DB, Morales-Nebreda L, Cheng Y, Yeldandi A, Bhorade S, Pardo A, Selman M, Ridge K, Gius D, Budinger GR, Kamp DW. SIRT3 deficiency promotes lung fibrosis by augmenting alveolar epithelial cell mitochondrial DNA damage and apoptosis. FASEB J. 2017 Jun;31(6):2520-2532. (PubMed)

Jensen MA, Ferretti V, Grossman RL, Staudt LM. The NCI Genomic Data Commons as an engine for precision medicine. Blood. 2017 Jul 27;130(4):453-459. (PubMed)

Jha S, Rollins MG, Fuchs G, Procter DJ, Hall EA, Cozzolino K, Sarnow P, Savas JN, Walsh D. Trans-kingdom mimicry underlies ribosome customization by a poxvirus kinase. Nature. 2017 Jun 29; 546, 651–655. (PubMed)

Jiang B, Suen R, Wang JJ, Zhang ZJ, Wertheim JA, Ameer GA. Vascular scaffolds with enhanced antioxidant activity inhibit graft calcification. Biomaterials. 2017 Nov;144:166-175. (PubMed)

Jiang B, Wu Y, Haney CR, Duan C, Ameer GA. Assessment of an Engineered Endothelium via Single-Photon Emission Computed Tomography. Biotechnol Bioeng. 2017 Oct;114(10):2371-2378. (PubMed)

Jun S, Rust MJ. A Fundamental Unit of Cell Size in Bacteria. Trends Genet. 2017 Jul;33(7):433-435. (PubMed)

Kadri S, Long BC, Mujacic I, Zhen CJ, Wurst MN, Sharma S, McDonald N, Niu N, Benhamed S, Tuteja JH, Seiwert TY, White KP, McNerney ME, Fitzpatrick C, Wang YL, Furtado LV, Segal JP. Clinical Validation of a Next-Generation Sequencing Genomic Oncology Panel via Cross-Platform Benchmarking against Established Amplicon Sequencing Assays. J Mol Diagn. 2017 Jan;19(1):43-56. (PubMed)

Kamar RI, Banigan EJ, Erbas A, Giuntoli RD, Olvera de la Cruz M, Johnson RC, Marko JF. Facilitated dissociation of transcription factors from single DNA binding sites. Proc Natl Acad Sci U S A. 2017 Apr 18;114(16):E3251-E3257. (PubMed)

Karginov TA, Pastor DP, Semler BL, Gomez CM. Mammalian Polycistronic mRNAs and Disease. Trends Genet. 2017 Feb;33(2):129-142. Review. (PubMed)

Karim AS, Dudley QM, Jewett MC. (2017) Cell-Free Synthetic Systems for Metabolic Engineering and Biosynthetic Pathway Prototyping, in Industrial Biotechnology: Microorganisms (eds C. Wittmann and J. C. Liao), Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim, Germany. (onlinelibrary)

Kathayat RS, Elvira PD, Dickinson BC. A fluorescent probe for cysteine depalmitoylation reveals dynamic APT signaling. Nat Chem Biol. 2017 Feb;13(2):150-152. (PubMed)

Krist DT, Foote PK, Statsyuk AV. UbFluor: A Fluorescent Thioester to Monitor HECT E3 Ligase Catalysis. Curr Protoc Chem Biol. 2017 Mar 2;9(1):11-37. (PubMed)

Labbadia J, Brielmann RM, Neto MF, Lin YF, Haynes CM, Morimoto RI. Mitochondrial Stress Restores the Heat Shock Response and Prevents Proteostasis Collapse during Aging. Cell Reports. Volume 21, Issue 6, p1481–1494, 7 November 2017. [Epub ahead of print] (www.cell.com)

Landfors M, Johansen J, Aronsen JM, Vågbø CB, Doré LC, He C, Sjaastad I, Sætrom P, Fedorcsák P, Dahl JA, Aanes H, Fußer M, Klungland A. Genome-wide profiling of DNA 5-hydroxymethylcytosine during rat Sertoli cell maturation. Cell Discov. 2017 May 9;3:17013. eCollection 2017. (PubMed)

Lee D, Yang H, Kim J, Brady S, Zdraljevic S, Zamanian M, Kim H, Paik YK, Kruglyak L, Andersen EC, Lee J. The genetic basis of natural variation in a phoretic behavior. Nat Commun. 2017 Aug 17;8(1):273. (PubMed)

Leech KA, Hornby TG. High-intensity locomotor exercise increases brain-derived neurotrophic factor in individuals with incomplete spinal cord injury. J Neurotrauma. 2017 Mar 15;34(6):1240-1248. (PubMed)

LeMaster E, Shentu TP, Huang RT, Zhang C, Adamos C, Fancher I, Ng C, Christoforidis T, Subbaiah P, Eddington D, Cho M, Fang Y, Minshall R, Levitan I. Pro-atherogenic disturbed flow increases endothelial stiffness via enhanced CD36/Cav1- mediated oxLDL uptake. The FASEB Journal. April 2017 vol. 31 no. 1 Supplement 837.13. (fasebj.org)

Leypunskiy E, Lin J, Yoo H, Lee U, Dinner AR, Rust MJ. The cyanobacterial circadian clock follows midday in vivo and in vitro. Elife. 2017 Jul 7;6. (PubMed)

Li J, Labbadia J, Morimoto RI. Rethinking HSF1 in Stress, Development, and Organismal Health. Trends Cell Biol. 2017 Sep 7. Review. [Epub ahead of print] (PubMed)

Li L, Sheng Y, Li W, Hu C, Mittal N, Tohyama K, Seba A, Zhao YY, Ozer H, Zhu T, Qian Z. β-Catenin Is a Candidate Therapeutic Target for Myeloid Neoplasms with del(5q). Cancer Res. 2017 Aug 1;77(15):4116-4126. (PubMed)

Li Y, Urban A, Midura D, Simon HG, Wang QT. Proteomic characterization of epicardial-myocardial signaling reveals novel regulatory networks including a role for NF-κB in epicardial EMT. PLoS One. 2017 Mar 30;12(3):e0174563. eCollection 2017. (PubMed)

Liu S, Liu Y, Zhang Q, Wu J, Liang J, Yu S, Wei GH, White KP, Wang X. Systematic identification of regulatory variants associated with cancer risk. Genome Biol. 2017 Oct 23;18(1):194. (PubMed)

Liu X, Zhao B, Sun L, Bhuripanyo K, Wang Y, Bi Y, Davuluri RV, Duong DM, Nanavati D, Yin J, Kiyokawa H. Orthogonal ubiquitin transfer identifies ubiquitination substrates under differential control by the two ubiquitin activating enzymes. Nat Commun. 2017 Jan 30;8:14286. (PubMed)

Lyman KA, Han Y, Chetkovich DM. Animal models suggest the TRIP8b-HCN interaction is a therapeutic target for major depressive disorder. Expert Opin Ther Targets. 2017 Mar;21(3):235-237. (PubMed)

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