CBC-Funded Publications 2017

Updated: March 14, 2017

As of March 2017, over 1660 research papers have been published as a result of CBC funding.

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Almassalha LM, Tiwari A, Ruhoff PT, Stypula-Cyrus Y, Cherkezyan L, Matsuda H, Dela Cruz MA, Chandler JE, White C, Maneval C, Subramanian H, Szleifer I, Roy HK, Backman V. The Global Relationship between Chromatin Physical Topology, Fractal Structure, and Gene Expression. Sci Rep. 2017 Jan 24;7:41061. (PubMed)

Anderson LC, DeHart CJ, Kaiser NK, Fellers RT, Smith DF, Greer JB, LeDuc RD, Blakney GT, Thomas PM, Kelleher NL, Hendrickson CL. Identification and Characterization of Human Proteoforms by Top-Down LC-21 Tesla FT-ICR Mass Spectrometry. J Proteome Res. 2017 Feb 3;16(2):1087-1096. (PubMed)

Clevenger KD, Mascarenhas R, Catlin D, Wu R, Kelleher NL, Drake EJ, Gulick AM, Liu D, Fast W. Substrate Trapping in the Siderophore Tailoring Enzyme PvdQ. ACS Chem Biol. 2017 Feb 15. [Epub ahead of print] (PubMed)

DeHart CJ, Fellers RT, Fornelli L, Kelleher NL, Thomas PM. Bioinformatics Analysis of Top-Down Mass Spectrometry Data with ProSight Lite. Methods Mol Biol. 2017;1558:381-394. (PubMed)

Deibler KK, Mishra RK, Clutter MR, Antanasijevic A, Bergan R, Caffrey M, Scheidt KA. A Chemical Probe Strategy for Interrogating Inhibitor Selectivity Across the MEK kinase Family. ACS Chem Biol. 2017 Mar 6. [Epub ahead of print] (PubMed)

Dumanian ZP, Tollemar V, Ye J, Lu M, Zhu Y, Liao J, Ameer GA, He TC, Reid RR. Repair of critical sized cranial defects with BMP9-transduced calvarial cells delivered in a thermoresponsive scaffold. PLoS One. 2017 Mar 1;12(3):e0172327. (PubMed)

Erclik T, Li X, Courgeon M, Bertet C, Chen Z, Baumert R, Ng J, Koo C, Arain U, Behnia R, del Valle Rodriguez A, Senderowicz L, Negre N, White KP, Desplan C. Integration of temporal and spatial patterning generates neural diversity. Nature. 2017 Jan 19;541(7637):365-370. (PubMed)

Fornelli L, Durbin KR, Fellers RT, Early BP, Greer JB, LeDuc RD, Compton PD, Kelleher NL. Advancing Top-down Analysis of the Human Proteome Using a Benchtop Quadrupole-Orbitrap Mass Spectrometer. J Proteome Res. 2017 Feb 3;16(2):609-618. (PubMed)

Fornelli L, Toby TK, Schachner LF, Doubleday PF, Srzentić K, DeHart CJ, Kelleher NL. Top-down proteomics: Where we are, where we are going? J Proteomics. 2017 Feb 7. [Epub ahead of print] (PubMed)

Goering AW, Li J, McClure RA, Thomson RJ, Jewett MC, Kelleher NL. In vitro Reconstruction of Nonribosomal Peptide Biosynthesis Directly from DNA Using Cell-Free Protein Synthesis. ACS Synth Biol. 2017 Jan 20;6(1):39-44. (PubMed)

Grigera F, Wuerffel R, Kenter AL. MBD4 facilitates immunoglobulin class switch recombination. Mol Cell Biol. 2017 Jan 4;37(2). (PubMed)

Guerrier S, Plattner H, Richardson EH, Dacks JB, Turkewitz AP. An evolutionary balance: conservation vs. innovation in ciliate membrane trafficking. Traffic. 2017 Jan;18(1):18-28. Review. (PubMed)

Han Y, Heuermann RJ, Lyman KA, Fisher D, Ismail Q-A, Chetkovich DM. HCN-channel dendritic targeting requires bipartite interaction with TRIP8b and regulates antidepressant-like behavioral effects. Mol Psychiatry. 2017 Mar;22(3):458-465. (PubMed)

Hickox AE, Wong AC, Pak K, Strojny C, Ramirez M, Yates JR Rd, Ryan AF, Savas JN. Global Analysis of Protein Expression of Inner Ear Hair Cells. J Neurosci. 2017 Feb 1;37(5):1320-1339. (PubMed)

Kadri S, Long BC, Mujacic I, Zhen CJ, Wurst MN, Sharma S, McDonald N, Niu N, Benhamed S, Tuteja JH, Seiwert TY, White KP, McNerney ME, Fitzpatrick C, Wang YL, Furtado LV, Segal JP. Clinical Validation of a Next-Generation Sequencing Genomic Oncology Panel via Cross-Platform Benchmarking against Established Amplicon Sequencing Assays. J Mol Diagn. 2017 Jan;19(1):43-56. (PubMed)

Karginov TA, Pastor DP, Semler BL, Gomez CM. Mammalian Polycistronic mRNAs and Disease. Trends Genet. 2017 Feb;33(2):129-142. Review. (PubMed)

Karim AS, Dudley QM, Jewett MC. (2017) Cell-Free Synthetic Systems for Metabolic Engineering and Biosynthetic Pathway Prototyping, in Industrial Biotechnology: Microorganisms (eds C. Wittmann and J. C. Liao), Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim, Germany. (onlinelibrary)

Kathayat RS, Elvira PD, Dickinson BC. A fluorescent probe for cysteine depalmitoylation reveals dynamic APT signaling. Nat Chem Biol. 2017 Feb;13(2):150-152. (PubMed)

Liu X, Zhao B, Sun L, Bhuripanyo K, Wang Y, Bi Y, Davuluri RV, Duong DM, Nanavati D, Yin J, Kiyokawa H. Orthogonal ubiquitin transfer identifies ubiquitination substrates under differential control by the two ubiquitin activating enzymes. Nat Commun. 2017 Jan 30;8:14286. (PubMed)

Ma L, Zhao B, Chen K, Thomas A, Tuteja JH, He X, He C, White KP. Evolution of transcript modification by N6-methyladenosine in primates. Genome Res. 2017 Mar;27(3):385-392. (PubMed)

Magdaleno F, Blajszczak CC, Nieto N. Key Events Participating in the Pathogenesis of Alcoholic Liver Disease. Biomolecules. 2017 Jan 27;7(1). Review. (PubMed)

Mandacaru SC, do Vale LH, Vahidi S, Xiao Y, Skinner OS, Ricart CA, Kelleher NL, de Sousa MV, Konermann L. Characterizing the Structure and Oligomerization of Major Royal Jelly Protein 1 (MRJP1) by Mass Spectrometry and Complementary Biophysical Tools. Biochemistry. 2017 Mar 7. [Epub ahead of print] (PubMed)

Meydan S, Klepacki D, Karthikeyan S, Margus T, Thomas P, Jones JE, Khan Y, Briggs J, Dinman JD, Vázquez-Laslop N, Mankin AS. Programmed Ribosomal Frameshifting Generates a Copper Transporter and a Copper Chaperone from the Same Gene. Mol Cell. 2017 Jan 19;65(2):207-219. (PubMed)

Mendoza AD, Woodruff TK, Wignall SM, O’Halloran TV. Zinc availability during germline development impacts embryo viability in Caenorhabditis elegans. Comp Biochem Physiol C Toxicol Pharmacol. 2017 Jan;191:194-202. (PubMed)

Peek CB, Levine DC, Cedernaes J, Taguchi A, Kobayashi Y, Tsai SJ, Bonar NA, McNulty MR, Ramsey KM, Bass J. Circadian Clock Interaction with HIF1α Mediates Oxygenic Metabolism and Anaerobic Glycolysis in Skeletal Muscle. Cell Metab. 2017 Jan 10;25(1):86-92. (PubMed)

Perez White BE, Ventrella R, Kaplan N, Cable CJ, Thomas PM, Getsios S. EphA2 proteomics in human keratinocytes reveals a novel association with afadin and epidermal tight junctions. J Cell Sci. 2017 Jan 1;130(1):111-118. (PubMed)

Piunti A, Hashizume R, Morgan MA, Bartom ET, Horbinski CM, Marshall SA, Rendleman EJ, Ma Q, Takahashi YH, Woodfin AR, Misharin AV, Abshiru NA, Lulla RR, Saratsis AM, Kelleher NL, James CD, Shilatifard A. Therapeutic targeting of polycomb and BET bromodomain proteins in diffuse intrinsic pontine gliomas. Nat Med. 2017 Feb 27. [Epub ahead of print] (PubMed)

Que EL, Duncan FE, Bayer AR, Philips SJ, Roth EW, Bleher R, Gleber SC, Vogt S, Woodruff TK, O’Halloran TV. Zinc sparks induce physiochemical changes in the egg zona pellucida that prevent polyspermy. Integr Biol (Camb). 2017 Feb 20;9(2):135-144. (PubMed)

Rammohan N, Holbrook RJ, Rotz MW, MacRenaris KW, Preslar AT, Carney CE, Reichova V, Meade TJ. Gd(III)-Gold Nanoconjugates Provide Remarkable Cell Labeling for High Field Magnetic Resonance Imaging. Bioconjug Chem. 2017 Jan 18;28(1):153-160. (PubMed)

Schroeter ER, DeHart CJ, Cleland TP, Zheng W, Thomas PM, Kelleher NL, Bern M, Schweitzer MH. Expansion for the Brachylophosaurus canadensis Collagen I Sequence and Additional Evidence of the Preservation of Cretaceous Protein. J Proteome Res. 2017 Feb 3;16(2):920-932. (PubMed)

Spencer-Smith R, Koide A, Zhou Y, Eguchi RR, Sha F, Gajwani P, Santana D, Gupta A, Jacobs M, Herrero-Garcia E, Cobbert J, Lavoie H, Smith M, Rajakulendran T, Dowdell E, Okur MN, Dementieva I, Sicheri F, Therrien M, Hancock JF, Ikura M, Koide S, O’Bryan JP. Inhibition of RAS function through targeting an allosteric regulatory site. Nat Chem Biol. 2017 Jan;13(1):62-68. (PubMed)

Stricker TP, Brown CD, Bandlamudi C, McNerney M, Kittler R, Montoya V, Peterson A, Grossman R, White KP. Robust stratification of breast cancer subtypes using differential patterns of transcript isoform expression. PLoS Genet. 2017 Mar 6;13(3):e1006589. [Epub ahead of print] (PubMed)

Sundaram KM, Zhang Y, Mitra AK, Kouadio JK, Gwin K, Roman BR, Kossiakoff AA, Lengyel E, Piccirilli J. Prolactin receptor-mediated internalization of imaging agents detects epithelial ovarian cancer with enhanced sensitivity and specificity. Cancer Res. 2017 Feb 15. [Epub ahead of print] (PubMed)

Uzarski JS, DiVito MD, Wertheim JA, Miller WM. Essential design considerations for the resazurin reduction assay to noninvasively quantify cell expansion within perfused extracellular matrix scaffolds. Biomaterials, 2017. Available online 16 February 2017. (sciencedirect.com)

Wang J, Liao J, Zhang F, Song D, Lu M, Liu J, Wei Q, Tang S, Liu H, Fan J, Zou Y, Guo D, Huang J, Liu F, Ma C, Hu X, Li L, Qu X, Chen L, Weng Y, Lee M, J, He T, -C, Reid R, R, Zhang J, NEL-Like Molecule-1 (Nell1) Is Regulated by Bone Morphogenetic Protein 9 (BMP9) and Potentiates BMP9-Induced Osteogenic Differentiation at the Expense of Adipogenesis in Mesenchymal Stem Cells. Cell Physiol Biochem 2017;41:484-500. (karger.com)

Wolf Greenstein A, Majumdar N, Yang P, Subbaiah PV, Kineman RD, Cordoba-Chacon J. Hepatocyte-specific, PPARγ-regulated mechanisms to promote steatosis in adult mice. J Endocrinol. 2017 Jan;232(1):107-121. (PubMed)

Xiao J, Chen S, Yi J, Zhang HF, Ameer GA. A Cooperative Copper Metal–Organic Framework. Hydrogel System Improves Wound Healing in Diabetes. Adv. Funct. Mater. 2017, 27, 1604872. (onlinelibrary)

Yang X, Park SH, Chang HC, Shapiro JS, Vassilopoulos A, Sawicki KT, Chen C, Shang M, Burridge PW, Epting CL, Wilsbacher LD, Jenkitkasemwong S, Knutson M, Gius D, Ardehali H. Sirtuin 2 regulates cellular iron homeostasis via deacetylation of transcription factor NRF2. J Clin Invest. 2017 Mar 13. [Epub ahead of print] (PubMed)

Zeng F, Chen Y, Remis J, Shekhar M, Phillips JC, Tajkhorshid E, Jin H. Structural basis of co-translational quality control by ArfA and RF2 bound to ribosome. Nature. 2017 Jan 26;541(7638):554-557. (PubMed)

Zhang Z, Tateda C, Jiang SC, Shrestha J, Jelenska J, Speed DJ, Greenberg J. A suite of receptor-like kinases and a putative mechano-sensitive channel are involved in autoimmunity and plasma membrane-based defenses in Arabidopsis. Mol Plant Microbe Interact. 2017 Jan 4. [Epub ahead of print] (PubMed)