CBC-Funded Publications 2017

Scroll down or select a different year:

2018  I  2017  I  2016  I  2015  I  2014  I  2013  I  2012  I  2011  I  2010  I  2009  I  2008  I  2007  I  2006
2017

Acar H, Srivastava S, Chung EJ, Schnorenberg MR, Barrett JC, LaBelle JL, Tirrell M. Self-assembling peptide-based building blocks in medical applications. Adv Drug Deliv Rev. 2017 Feb;110-111:65-79. Review. (PubMed)

Allen S, Osorio O, Liu YG, Scott E. Facile assembly and loading of theranostic polymersomes via multi-impingement flash nanoprecipitation. J Control Release. 2017 Jul 20;262:91-103. (PubMed)

Almassalha LM, Bauer GM, Wu W, Cherkezyan L, Zhang D, Kendra A, Gladstein S, Chandler JE, VanDerway D, Seagle BLL, Ugolkov A, Billadeau DD, O’Halloran TV, Mazar AP, Roy HK, Szleifer I, Shahabi S, Backman V. Macrogenomic engineering via modulation of the scaling of chromatin packing density. Nat Biomed Eng. 2017 Nov;1(11):902-913. (PubMed)

Almassalha LM, Tiwari A, Ruhoff PT, Stypula-Cyrus Y, Cherkezyan L, Matsuda H, Dela Cruz MA, Chandler JE, White C, Maneval C, Subramanian H, Szleifer I, Roy HK, Backman V. The Global Relationship between Chromatin Physical Topology, Fractal Structure, and Gene Expression. Sci Rep. 2017 Jan 24;7:41061. (PubMed)

Anderson LC, DeHart CJ, Kaiser NK, Fellers RT, Smith DF, Greer JB, LeDuc RD, Blakney GT, Thomas PM, Kelleher NL, Hendrickson CL. Identification and Characterization of Human Proteoforms by Top-Down LC-21 Tesla FT-ICR Mass Spectrometry. J Proteome Res. 2017 Feb 3;16(2):1087-1096. (PubMed)

Aprison EZ, Ruvinsky I. Counteracting Ascarosides Act through Distinct Neurons to Determine the Sexual Identity of C. elegans Pheromones. Curr Biol. Sep 11;27(17):2589-2599.e3. (PubMed)

Arenas OM, Zaharieva EE, Para A, Vásquez-Doorman C, Petersen CP, Gallio M. Activation of planarian TRPA1 by reactive oxygen species reveals a conserved mechanism for animal nociception. Nat Neurosci. 2017 Dec;20(12):1686-1693. (PubMed)

Banga RJ, Krovi SA, Narayan SP, Sprangers AJ, Liu G, Mirkin CA, Nguyen ST. Drug-Loaded Polymeric Spherical Nucleic Acids: Enhancing Colloidal Stability and Cellular Uptake of Polymeric Nanoparticles through DNA Surface-Functionalization. Biomacromolecules. 2017 Feb 13;18(2):483-489. (PubMed)

Banigan EJ, Stephens AD, Marko JF. Mechanics and Buckling of Biopolymeric Shells and Cell Nuclei. Biophys J. 2017 Oct 17;113(8):1654-1663. (PubMed)

Barefield DY, Puckelwartz MJ, Kim EY, Wilsbacher LD, Vo AH, Waters EA, Earley JU, Hadhazy M, Dellefave-Castillo LM, Pesce LL, McNally EM. Experimental Modeling Supports a Role for MyBP-HL as a Novel Myofilament Component in Arrhythmia and Dilated Cardiomyopathy. Circulation. 2017 Oct 17;136(16):1477-1491. (PubMed)

Barrett JC, Ulery BD, Trent A, Liang S, David NA, Tirrell MV. Modular Peptide Amphiphile Micelles Improving an Antibody-Mediated Immune Response to Group A Streptococcus. ACS Biomater Sci Eng. 2017;3(2):144-152. (PubMed)

Basak SC, Mishra RK. Editorial: Descriptor Spaces for QSAR: Delving into the History of the Expanding Frontier. Curr Comput Aided Drug Des. 2017;13(1):4-7. (PubMed)

Bass JT. The circadian clock system’s influence in health and disease. Genome Med. 2017 Oct 31;9(1):94. (PubMed)

Basu A, Komazin-Meredith G, McCarthy C, Antanasijevic A, Cardinale SC, Mishra RK, Barnard DL, Caffrey M, Rong L, Bowlin TL. Molecular Mechanism Underlying the Action of Influenza A Virus Fusion Inhibitor MBX2546. ACS Infect Dis. 2017 May 12;3(5):330-335. (PubMed)

Bauer GM, Stypula-Cyrus Y, Subramanian H, Cherkezyan L, Viswanathan P, Zhang D, Iyengar R, Bagalkar S, Derbas J, Graff T, Gladstein S, Almassalha LM, Chandler JE, Roy HK, Backman V. The transformation of the nuclear nanoarchitecture in human field carcinogenesis. Future Sci OA. 2017 May 5;3(3):FSO206. Review. (PubMed)

Baumgarten SC, Armouti M, Ko C, Stocco C. IGF1R Expression in Ovarian Granulosa Cells is Essential for Steroidogenesis, Follicle Survival, and Fertility in Female Mice. Endocrinology. 2017 Jul 1;158(7):2309-2318. (PubMed)

Beck M, Kathayat R, Cham C, Chang E, Dickinson B. Michael addition-based probes for ratiometric fluorescence imaging of protein S-depalmitoylases in live cells and tissues. Chem. Sci. Published on 11 September 2017. (pubs.rsc.org)

Belaghzal H, Dekker J, Gibcus JH. Hi-C 2.0: An optimized Hi-C procedure for high-resolution genome-wide mapping of chromosome conformation. Methods. 2017 Jul 1;123:56-65. (PubMed)

Biancucci M, Dolores JS, Wong J, Grimshaw S, Anderson WF, Satchell KJ, Kwon K. New ligation independent cloning vectors for expression of recombinant proteins with a self-cleaving CPD/6xHis-tag. BMC Biotechnol. 2017 Jan 5;17(1):1. (PubMed)

Bondoc JMG, Wolf NM, Ndichuck M, Abad-Zapatero C, Movahedzadeh F. Mutagenesis of threonine to serine in the active site of Mycobacterium tuberculosis fructose-1,6-bisphosphatase (Class II) retains partial enzyme activity. Biotechnol Rep (Amst). 2017 Jun 15;15:48-54. eCollection 2017 Sep. (PubMed)

Brahmachari S, Gunn KH, Giuntoli RD, Mondragón A, Marko JF. Nucleation of Multiple Buckled Structures in Intertwined DNA Double Helices. Phys Rev Lett. 2017 Nov 3;119(18):188103. (PubMed)

Brahmachari S, Marko JF. Torque and buckling in stretched intertwined double-helix DNAs. Phys Rev E. 2017 May;95(5-1):052401. (PubMed)

Bristow G, Nwabuisi-Heath E, Dong E, Guidotti A, Sodhi M. Altered RNA Editing and Behavior in Prenatally Stressed Mice are Reversed by Clozapine. Biological Psychiatry. 15 May 2017 vol. 81:10 Supplement:S3. (sciencedirect.com)

Bristow G, Sodhi M. AMPA receptor RNA editing may alleviate the long-term effects of prenatal stress. The FASEB Journal. April 2017 vol. 31 no. 1 Supplement 988.7. (fasebj.org)

Broussard JA, Yang R, Huang C, Nathamgari SSP, Beese AM, Godsel LM, Hegazy MH, Lee S, Zhou F, Sniadecki NJ, Green KJ, Espinosa HD. The desmoplakin/intermediate filament linkage regulates cell mechanics. Mol Biol Cell. 2017 Nov 7;28(23):3156-3164. (PubMed)

Cabezas MD, Mirkin CA, Mrksich M. Nanopatterned Extracellular Matrices Enable Cell-Based Assays with a Mass Spectrometric Readout. Nano Lett. 2017 Mar 8;17(3):1373-1377. (PubMed)

Calik MW, Carley DW. Co-Localization of Serotonin and Cannabinoid Receptors in the Nodose Ganglia. Sleep (2017) 40 (suppl_1): A52. (academic.oup.com)

Calvert AE, Chalastanis A, Wu Y, Hurley LA, Kouri FM, Bi Y, Kachman M, May JL, Bartom E, Hua Y, Mishra RK, Schiltz GE, Dubrovskyi O, Mazar AP, Peter ME, Zheng H, James CD, Burant CF, Chandel NS, Davuluri RV, Horbinski C, Stegh AH. Cancer-Associated IDH1 Promotes Growth and Resistance to Targeted Therapies in the Absence of Mutation. Cell Rep. 2017 May 30;19(9):1858-1873. (PubMed)

Chandler JE, Stypula-Cyrus Y, Almassalha L, Bauer G, Bowen L, Subramanian H, Szleifer I, Backman V. Colocalization of cellular nanostructure using confocal fluorescence and partial wave spectroscopy. J Biophotonics. 2017 Mar;10(3):377-384. (PubMed)

Chen PC, Du JS, Meckes B, Huang L, Xie Z, Hedrick JL, Dravid VP, Mirkin CA. Structural Evolution of Three-Component Nanoparticles in Polymer Nanoreactors. J Am Chem Soc. 2017 Jul 26;139(29):9876-9884. (PubMed)

Chen R, Davis LK, Guter S, Wei Q, Jacob S, Potter MH, Cox NJ, Cook EH, Sutcliffe JS, Li B. Leveraging blood serotonin as an endophenotype to identify de novo and rare variants involved in autism. Mol Autism. 2017 Mar 21;8:14. eCollection 2017. (PubMed)

Cheng J, Demeulemeester J, Wedge DC, Vollan HKM, Pitt JJ, Russnes HG, Pandey BP, Nilsen G, Nord S, Bignell GR, White KP, Børresen-Dale AL, Campbell PJ, Kristensen VN, Stratton MR, Lingjærde OC, Moreau Y, Loo PV. Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors. Nat Commun. 2017 Oct 31;8(1):1221. (PubMed)

Cherkezyan L, Zhang D, Subramanian H, Capoglu I, Taflove A, Backman V. Review of interferometric spectroscopy of scattered light for the quantification of subdiffractional structure of biomaterials. J Biomed Opt. 2017 Mar 1;22(3):30901. (PubMed)

Chetnani B, Mondragón A. Molecular envelope and atomic model of an anti-terminated glyQS T-box regulator in complex with tRNAGly. Nucleic Acids Res. 2017 Jul 27;45(13):8079-8090. (PubMed)

Chhibber A, French CE, Yee SW, Gamazon ER, Theusch E, Qin X, Webb A, Papp AC, Wang A, Simmons CQ, Konkashbaev A, Chaudhry AS, Mitchel K, Stryke D, Ferrin TE, Weiss ST, Kroetz DL, Sadee W, Nickerson DA, Krauss RM, George AL, Schuetz EG, Medina MW, Cox NJ, Scherer SE, Giacomini KM, Brenner SE. Transcriptomic variation of pharmacogenes in multiple human tissues and lymphoblastoid cell lines. Pharmacogenomics J. 2017 Mar;17(2):137-145. (PubMed)

Chinen AB, Guan CM, Ko CH, Mirkin CA. The Impact of Protein Corona Formation on the Macrophage Cellular Uptake and Biodistribution of Spherical Nucleic Acids. Small. 2017 Apr;13(16). (PubMed)

Cho S, Chlipala G, Green S, Lee H, Jeong H. Differential gut microbiota modulates the susceptibility to acetaminophen-induced hepatotoxicity. The FASEB Journal. April 2017 vol. 31 no. 1 Supplement 668.11. (fasebj.org)

Cho S, Park W, Gordon A, Gates V, Lewandowski R, Salem R, Larson A, Kim D. Bimetal nano-radiosensitizers for 90Y radioembolization. Journal of Vascular and Interventional Radiology, Volume 28, Issue 2, Supplement, February 2017, Page S10. (www.jvir.org)

Cho S, Tripathi A, Chlipala G, Green S, Lee H, Chang EB, Jeong H. Fructose diet alleviates acetaminophen-induced hepatotoxicity in mice. PLoS ONE. 2017 Aug 23;12(8):e0182977. eCollection 2017. (PubMed)

Ciryam P, Lambert-Smith IA, Bean DM, Freer R, Cid F, Tartaglia GG, Saunders DN, Wilson MR, Oliver SG, Morimoto RI, Dobson CM, Vendruscolo M, Favrin G, Yerbury JJ. Spinal motor neuron protein supersaturation patterns are associated with inclusion body formation in ALS. Proc Natl Acad Sci U S A. 2017 May 16;114(20):E3935-E3943. (PubMed)

Cleland TP, DeHart CJ, Fellers RT, VanNispen AJ, Greer JB, LeDuc RD, Parker WR, Thomas PM, Kelleher NL, Brodbelt JS. High-Throughput Analysis of Intact Human Proteins Using UVPD and HCD on an Orbitrap Mass Spectrometer. J Proteome Res. 2017 May 5;16(5):2072-2079. (PubMed)

Clevenger KD, Bok JW, Ye R, Miley GP, Verdan MH, Velk T, Chen C, Yang K, Robey MT, Gao P, Lamprecht M, Thomas PM, Islam MN, Palmer JM, Wu CC, Keller NP, Kelleher NL. A scalable platform to identify fungal secondary metabolites and their gene clusters. Nat Chem Biol. 2017 Aug;13(8):895-901. (PubMed)

Clevenger KD, Mascarenhas R, Catlin D, Wu R, Kelleher NL, Drake EJ, Gulick AM, Liu D, Fast W. Substrate Trapping in the Siderophore Tailoring Enzyme PvdQ. ACS Chem Biol. 2017 Mar 17;12(3):643-647. (PubMed)

Cook DE, Andersen EC. VCF-kit: assorted utilities for the variant call format. Bioinformatics. 2017 May 15;33(10):1581-1582. (PubMed)

Cook DE, Zdraljevic S, Roberts JP, Andersen EC. CeNDR, the Caenorhabditis elegans natural diversity resource. Nucleic Acids Res. 2017 Jan 4;45(D1):D650-D657. (PubMed)

Cui Q, Shi H, Ye P, Li L, Qu Q, Sun G, Sun G, Lu Z, Huang Y, Yang CG, Riggs AD, He C, Shi Y. m6A RNA Methylation Regulates the Self-Renewal and Tumorigenesis of Glioblastoma Stem Cells. Cell Rep. 2017 Mar 14;18(11):2622-2634. (PubMed)

Cybulski TR, Boyden ES, Church GM, Tyo KEJ, Kording KP. Nucleotide-time alignment for molecular recorders. PLoS Comput Biol. 2017 May 1;13(5):e1005483. eCollection 2017 May. (PubMed)

Czyż DM, Willett J, Crosson S. Brucella abortus induces a Warburg shift in host metabolism that enhances intracellular replication of the pathogen. J Bacteriol. 2017 Jul 11;199(15). (PubMed)

D’Auria L, Reiter C, Ward E, Moyano AL, Marshall MS, Nguyen D, Scesa G, Hauck Z, van Breemen R, Givogri MI, Bongarzone ER. Psychosine enhances the shedding of membrane microvesicles: Implications in demyelination in Krabbe’s disease. PLoS One. 2017 May 22;12(5):e0178103. eCollection 2017. (PubMed)

Dai Q, Moshitch-Moshkovitz S, Han D, Kol N, Amariglio N, Rechavi G, Dominissini D, He C. Nm-seq maps 2′-O-methylation sites in human mRNA with base precision. Nat Methods. 2017 Jul;14(7):695-698. (PubMed)

Davis-Roca AC, Muscat CC, Wignall SM. Caenorhabditis elegans oocytes detect meiotic errors in the absence of canonical end-on kinetochore attachments. J Cell Biol. 2017 May 1;216(5):1243-1253. (PubMed)

DeBerge M, Yeap XY, Dehn S, Zhang S, Grigoryeva LS, Misener S, Procissi D, Zhou X, Lee DC, Muller WA, Luo X, Rothlin C, Tabas I, Thorp EB. MerTK Cleavage on Resident Cardiac Macrophages Compromises Repair after Myocardial Ischemia Reperfusion Injury. Circ Res. 2017 Sep 29;121(8):930-940. (PubMed)

DeBerge M, Shuang Zhang S, Glinton K, Grigoryeva L, Hussein I, Vorovich E, Ho K, Luo X, B. Thorp EB. Efferocytosis and Outside-In Signaling by Cardiac Phagocytes. Links to Repair, Cellular Programming, and Intercellular Crosstalk in Heart. Front Immunol. 2017 Nov 1;8:1428. (PubMed)

Dechery JB, MacLean JN. Emergent cortical circuit dynamics contain dense, interwoven ensembles of spike sequences. J Neurophysiol. 2017 Sep 1;118(3):1914-1925. (PubMed)

DeHart CJ, Fellers RT, Fornelli L, Kelleher NL, Thomas PM. Bioinformatics Analysis of Top-Down Mass Spectrometry Data with ProSight Lite. Methods Mol Biol. 2017;1558:381-394. (PubMed)

Deibler KK, Mishra RK, Clutter MR, Antanasijevic A, Bergan R, Caffrey M, Scheidt KA. A Chemical Probe Strategy for Interrogating Inhibitor Selectivity Across the MEK kinase Family. ACS Chem Biol. 2017 May 19;12(5):1245-1256. (PubMed)

Dittmore A, Brahmachari S, Takagi Y, Marko JF, Neuman KC. Supercoiling DNA Locates Mismatches. Phys Rev Lett. 2017 Oct 6;119(14):147801. (PubMed)

Dolan ME, El Charif O, Wheeler HE, Gamazon ER, Ardeshir-Rouhani-Fard S, Monahan P, Feldman DR, Hamilton RJ, Vaughn DJ, Beard CJ, Fung C, Kim J, Fossa SD, Hertz DL, Mushiroda T, Kubo M, Einhorn LH, Cox NJ, Travis LB; Platinum Study Group. Clinical and Genome-Wide Analysis of Cisplatin-Induced Peripheral Neuropathy in Survivors of Adult-Onset Cancer. Clin Cancer Res. 2017 Oct 1;23(19):5757-5768. (PubMed)

Dong B, Almassalha LM, Soetikno BT, Chandler JE, Nguyen TQ, Urban BE, Sun C, Zhang HF, Backman V. Stochastic fluorescence switching of nucleic acids under visible light illumination. Opt Express. 2017 Apr 3;25(7):7929-7944. (PubMed)

Du JS, Chen PC, Meckes B, Xie Z, Zhu J, Liu Y, Dravid VP, Mirkin CA. The Structural Fate of Individual Multicomponent Metal-Oxide Nanoparticles in Polymer Nanoreactors. Angew Chem Int Ed Engl. 2017 Jun 19;56(26):7625-7629. (PubMed)

du Lac M, Scarpelli AH, Younger AK, Bates DG, Leonard JN. Predicting the Dynamics and Heterogeneity of Genomic DNA Content within Bacterial Populations across Variable Growth Regimes. ACS Synth Biol. 2017 Jul 21;6(7):1131-1139. (PubMed)

Dumanian ZP, Tollemar V, Ye J, Lu M, Zhu Y, Liao J, Ameer GA, He TC, Reid RR. Repair of critical sized cranial defects with BMP9-transduced calvarial cells delivered in a thermoresponsive scaffold. PLoS One. 2017 Mar 1;12(3):e0172327. (PubMed)

Edupuganti RR, Geiger S, Lindeboom RGH, Shi H, Hsu PJ, Lu Z, Wang SY, Baltissen MPA, Jansen PWTC, Rossa M, Müller M, Stunnenberg HG, He C, Carell T, Vermeulen M. N6-methyladenosine (m6A) recruits and repels proteins to regulate mRNA homeostasis. Nat Struct Mol Biol. 2017 Oct;24(10):870-878. (PubMed)

Erclik T, Li X, Courgeon M, Bertet C, Chen Z, Baumert R, Ng J, Koo C, Arain U, Behnia R, del Valle Rodriguez A, Senderowicz L, Negre N, White KP, Desplan C. Integration of temporal and spatial patterning generates neural diversity. Nature. 2017 Jan 19;541(7637):365-370. (PubMed)

Eren M, Place AT, Thomas PM, Flevaris P, Miyata T, Vaughan DE. PAI-1 is a critical regulator of FGF23 homeostasis. Sci Adv. 2017 Sep 13;3(9):e1603259. eCollection 2017 Sep. (PubMed)

Evans KS, Zhao Y, Brady SC, Long L, McGrath PT, Andersen EC. Correlations of Genotype with Climate Parameters Suggest Caenorhabditis elegans Niche Adaptations. G3 (Bethesda). 2017 Jan 5;7(1):289-298. (PubMed)

Ezponda T, Dupéré-Richer D, Will CM, Small EC, Varghese N, Patel T, Nabet B, Popovic R, Oyer J, Bulic M, Zheng Y, Huang X, Shah MY, Maji S, Riva A, Occhionorelli M, Tonon G, Kelleher N, Keats J, Licht JD. UTX/KDM6A Loss Enhances the Malignant Phenotype of Multiple Myeloma and Sensitizes Cells to EZH2 inhibition. Cell Rep. 2017 Oct 17;21(3):628-640. (PubMed)

Feng Q, Shen Y, Fu Y, Muroski ME, Zhang P, Wang Q, Xu C, Lesniak MS, Li G, Cheng Y. Self-Assembly of Gold Nanoparticles Shows Microenvironment-Mediated Dynamic Switching and Enhanced Brain Tumor Targeting. Theranostics. 2017 Apr 10;7(7):1875-1889. (PubMed)

Foote PK, Krist DT, Statsyuk AV. High-Throughput Screening of HECT E3 Ubiquitin Ligases Using UbFluor. Curr Protoc Chem Biol. 2017 Sep 14;9(3):174-195. (PubMed)

Fornelli L, Durbin KR, Fellers RT, Early BP, Greer JB, LeDuc RD, Compton PD, Kelleher NL. Advancing Top-down Analysis of the Human Proteome Using a Benchtop Quadrupole-Orbitrap Mass Spectrometer. J Proteome Res. 2017 Feb 3;16(2):609-618. (PubMed)

French AR, Sosnick TR, Rock RS. Investigations of human myosin VI targeting using optogenetically controlled cargo loading. Proc Natl Acad Sci U S A. 2017 Feb 28;114(9):E1607-E1616. (PubMed)

Gallik KL, Treffy RW, Nacke LM, Ahsan K, Rocha M, Green-Saxena A, Saxena A. Neural crest and cancer: Divergent travelers on similar paths. Review. Mech Dev. 2017 Dec;148:89-99. (PubMed)

Gan R, Perez JG, Carlson ED, Ntai I, Isaacs FJ, Kelleher NL, Jewett MC. Translation system engineering in Escherichia coli enhances non-canonical amino acid incorporation into proteins. Biotechnol Bioeng. 2017 May;114(5):1074-1086. (PubMed)

García-González AP, Ritter AD, Shrestha S, Andersen EC, Yilmaz LS, Walhout AJM. Bacterial Metabolism Affects the C. elegans Response to Cancer Chemotherapeutics. Cell. 2017 Apr 20;169(3):431-441.e8. (PubMed)

Gatto RG, Li W, Morfini GA, Magin RL. Diffusion Tensor Imaging Studies Identify Presymptomatic Axonal Degeneration in the Spinal Cord of an ALS Mouse Model. In: ISMRM 25th Annual Meeting & Exhibition. 2017 Jan 22. (www.ismrm.org)

Gebhardt MJ, Jacobson RK, Shuman HA. Seeing red; the development of pON.mCherry, a broad-host range constitutive expression plasmid for Gram-negative bacteria. PLoS One. 2017 Mar 3;12(3):e0173116. eCollection 2017. (PubMed)

Gebhardt MJ, Shuman HA. GigA and GigB are Master Regulators of Antibiotic Resistance, Stress Responses and Virulence in Acinetobacter baumannii. J Bacteriol. 2017 Apr 25;199(10). (PubMed)

Geeleher P, Huang RS. Exploring the Link between the Germline and Somatic Genome in Cancer. Cancer Discov. 2017 Apr;7(4):354-355. (PubMed)

Geeleher P, Zhang Z, Wang F, Gruener RF, Nath A, Morrison G, Bhutra S, Grossman RL, Huang RS. Discovering novel pharmacogenomic biomarkers by imputing drug response in cancer patients from large genomics studies. Genome Res. 2017 Oct;27(10):1743-1751. (PubMed)

Goering AW, Li J, McClure RA, Thomson RJ, Jewett MC, Kelleher NL. In vitro Reconstruction of Nonribosomal Peptide Biosynthesis Directly from DNA Using Cell-Free Protein Synthesis. ACS Synth Biol. 2017 Jan 20;6(1):39-44. (PubMed)

Gorman KT, Roby LC, Giuffre A, Huang R, Kay BK. Tandem phage-display for the identification of non-overlapping binding pairs of recombinant affinity reagents. Nucleic Acids Res. 2017 Oct 13;45(18):e158. (PubMed)

Greer SM, Holden DD, Fellers R, Kelleher NL, Brodbelt JS. Modulation of Protein Fragmentation Through Carbamylation of Primary Amines. J Am Soc Mass Spectrom. 2017 Aug;28(8):1587-1599. (PubMed)

Grigera F, Wuerffel R, Kenter AL. MBD4 facilitates immunoglobulin class switch recombination. Mol Cell Biol. 2017 Jan 4;37(2). (PubMed)

Grossman RL, Abel B, Angiuoli S, (…) Leiman LC. Collaborating to Compete: Blood Profiling Atlas in Cancer (BloodPAC) Consortium. Clin Pharmacol Ther. 2017 May;101(5):589-592. Review. (PubMed)

Guerrier S, Plattner H, Richardson EH, Dacks JB, Turkewitz AP. An evolutionary balance: conservation vs. innovation in ciliate membrane trafficking. Traffic. 2017 Jan;18(1):18-28. Review. (PubMed)

Gunn KH, Marko JF, Mondragón A. An orthogonal single-molecule experiment reveals multiple-attempt dynamics of type IA topoisomerases. Nat Struct Mol Biol. 2017 May;24(5):484-490. (PubMed)

Guo Y, Cho S, Chung E, Park JS, Jeong H. Structural differences in gut microbiota lead to altered hepatic expression of Drug Disposition Genes (DDG) in mice. The FASEB Journal. April 2017 vol. 31 no. 1 Supplement 668.3. (fasebj.org)

Gutka HJ, Wolf NM, Bondoc JMG, Movahedzadeh F. Enzymatic Characterization of Fructose 1,6-Bisphosphatase II from Francisella tularensis, an Essential Enzyme for Pathogenesis. Appl Biochem Biotechnol. 2017 Dec;183(4):1439-1454. (PubMed)

Gürsoy G, Xu Y, Kenter AL, Liang J. Computational construction of 3D chromatin ensembles and prediction of functional interactions of alpha-globin locus from 5C data. 2017. Nucleic Acids Res. 2017 Nov 16;45(20):11547-11558. (PubMed)

Gürsoy G, Xu Y, Liang J. Spatial organization of the budding yeast genome in the cell nucleus and identification of specific chromatin interactions from multi-chromosome constrained chromatin model. PLoS Comput Biol. 2017 Jul 13;13(7):e1005658. eCollection 2017 Jul. (PubMed)

Han Y, Heuermann RJ, Lyman KA, Fisher D, Ismail Q-A, Chetkovich DM. HCN-channel dendritic targeting requires bipartite interaction with TRIP8b and regulates antidepressant-like behavioral effects. Mol Psychiatry. 2017 Mar;22(3):458-465. (PubMed)

Han Y, Yan C, Nguyen THD, Jackobel AJ, Ivanov I, Knutson BA, He Y. Structural mechanism of ATP-independent transcription initiation by RNA polymerase I. Elife. 2017 Jun 17;6. (PubMed)

Haverland NA, Skinner OS, Fellers RT, Tariq AA, Early BP, LeDuc RD, Fornelli L, Compton PD, Kelleher NL. Defining Gas-Phase Fragmentation Propensities of Intact Proteins During Native Top-Down Mass Spectrometry. J Am Soc Mass Spectrom. 2017 Jun;28(6):1203-1215. (PubMed)

Haverland NA, Waas M, Ntai I, Keppel T, Gundry RL, Kelleher NL. Cell Surface Proteomics of N-Linked Glycoproteins for Typing of Human Lymphocytes. Proteomics. Proteomics. 2017 Oct;17(19). (PubMed)

Hendricks MP, Sato K, Palmer LC, Stupp SI. Supramolecular Assembly of Peptide Amphiphiles. Acc Chem Res. 2017 Oct 17;50(10):2440-2448. (PubMed)

Henry CS, Rotman E, Lathem WW, Tyo KE, Hauser AR, Mandel MJ. Generation and Validation of the iKp1289 Metabolic Model for Klebsiella pneumoniae KPPR1. J Infect Dis. 2017 Feb 15;215(suppl_1):S37-S43. (PubMed)

Hickox AE, Wong AC, Pak K, Strojny C, Ramirez M, Yates JR Rd, Ryan AF, Savas JN. Global Analysis of Protein Expression of Inner Ear Hair Cells. J Neurosci. 2017 Feb 1;37(5):1320-1339. (PubMed)

Hong C, Song D, Lee DK, Lin L, Pan HC, Lee D, Deng P, Liu Z, Hadaya D, Lee HL, Mohammad A, Zhang X, Lee M, Wang CY, Ho D. Reducing posttreatment relapse in cleft lip palatal expansion using an injectable estrogen-nanodiamond hydrogel. Proc Natl Acad Sci U S A. 2017 Aug 29;114(35):E7218-E7225. (PubMed)

Hsu PJ, Zhu Y, Ma H, Guo Y, Shi X, Liu Y, Qi M, Lu Z, Shi H, Wang J, Cheng Y, Luo G, Dai Q, Liu M, Guo X, Sha J, Shen B, He C. Ythdc2 is an N6-methyladenosine binding protein that regulates mammalian spermatogenesis. Cell Res. 2017 Sep;27(9):1115-1127. (PubMed)

Hui E, Cheung J, Zhu J, Su X, Taylor MJ, Wallweber HA, Sasmal DK, Huang J, Kim JM, Mellman I, Vale RD. T cell costimulatory receptor CD28 is a primary target for PD-1-mediated inhibition. Science. 2017 Mar 31;355(6332):1428-1433. (PubMed)

Hung AH, Lilley LM, Hu F, Harrison VS, Meade TJ. Magnetic barcode imaging for contrast agents. Magn Reson Med. 2017 Mar;77(3):970-978. (PubMed)

Ichikawa Y, Connelly CF, Appleboim A, Miller TC, Jacobi H, Abshiru NA, Chou HJ, Chen Y, Sharma U, Zheng Y, Thomas PM, Chen HV, Bajaj V, Müller CW, Kelleher NL, Friedman N, Bolon DN, Rando OJ, Kaufman PD. A synthetic biology approach to probing nucleosome symmetry. Elife. 2017 Sep 12;6. (PubMed)

Jablonski RP, Kim SJ, Cheresh P, Williams DB, Morales-Nebreda L, Cheng Y, Yeldandi A, Bhorade S, Pardo A, Selman M, Ridge K, Gius D, Budinger GR, Kamp DW. SIRT3 deficiency promotes lung fibrosis by augmenting alveolar epithelial cell mitochondrial DNA damage and apoptosis. FASEB J. 2017 Jun;31(6):2520-2532. (PubMed)

Jason F, Fuchsberger C, Mahajan A, (…) Bell GI, (…) McCarthy MI. Sequence data and association statistics from 12,940 type 2 diabetes cases and controls. Sci Data. 2017 Dec 19;4:170179. (PubMed)

Jensen MA, Ferretti V, Grossman RL, Staudt LM. The NCI Genomic Data Commons as an engine for precision medicine. Blood. 2017 Jul 27;130(4):453-459. (PubMed)

Jha S, Rollins MG, Fuchs G, Procter DJ, Hall EA, Cozzolino K, Sarnow P, Savas JN, Walsh D. Trans-kingdom mimicry underlies ribosome customization by a poxvirus kinase. Nature. 2017 Jun 29; 546, 651–655. (PubMed)

Jiang B, Suen R, Wang JJ, Zhang ZJ, Wertheim JA, Ameer GA. Vascular scaffolds with enhanced antioxidant activity inhibit graft calcification. Biomaterials. 2017 Nov;144:166-175. (PubMed)

Jiang B, Wu Y, Haney CR, Duan C, Ameer GA. Assessment of an Engineered Endothelium via Single-Photon Emission Computed Tomography. Biotechnol Bioeng. 2017 Oct;114(10):2371-2378. (PubMed)

Jun S, Rust MJ. A Fundamental Unit of Cell Size in Bacteria. Trends Genet. 2017 Jul;33(7):433-435. (PubMed)

Kadri S, Long BC, Mujacic I, Zhen CJ, Wurst MN, Sharma S, McDonald N, Niu N, Benhamed S, Tuteja JH, Seiwert TY, White KP, McNerney ME, Fitzpatrick C, Wang YL, Furtado LV, Segal JP. Clinical Validation of a Next-Generation Sequencing Genomic Oncology Panel via Cross-Platform Benchmarking against Established Amplicon Sequencing Assays. J Mol Diagn. 2017 Jan;19(1):43-56. (PubMed)

Kamar RI, Banigan EJ, Erbas A, Giuntoli RD, Olvera de la Cruz M, Johnson RC, Marko JF. Facilitated dissociation of transcription factors from single DNA binding sites. Proc Natl Acad Sci U S A. 2017 Apr 18;114(16):E3251-E3257. (PubMed)

Karginov TA, Pastor DP, Semler BL, Gomez CM. Mammalian Polycistronic mRNAs and Disease. Trends Genet. 2017 Feb;33(2):129-142. Review. (PubMed)

Karim AS, Dudley QM, Jewett MC. (2017) Cell-Free Synthetic Systems for Metabolic Engineering and Biosynthetic Pathway Prototyping, in Industrial Biotechnology: Microorganisms (eds C. Wittmann and J. C. Liao), Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim, Germany. (onlinelibrary)

Kathayat RS, Elvira PD, Dickinson BC. A fluorescent probe for cysteine depalmitoylation reveals dynamic APT signaling. Nat Chem Biol. 2017 Feb;13(2):150-152. (PubMed)

Keenholtz RA, Dhanaraman T, Palou R, Yu J, D’Amours D, Marko JF. Oligomerization and ATP stimulate condensin-mediated DNA compaction. Sci Rep. 2017 Oct 27;7(1):14279. (PubMed)

Kingsley CN, Antanasijevic A, Palka-Hamblin H, Durst M, Ramirez B, Lavie A, Caffrey M. Probing the metastable state of influenza hemagglutinin. J Biol Chem. 2017 Dec 29;292(52):21590-21597. (PubMed)

Kirstein J, Arnsburg K, Scior A, Szlachcic A, Guilbride DL, Morimoto RI, Bukau B, Nillegoda NB. In vivo properties of the disaggregase function of J-proteins and Hsc70 in Caenorhabditis elegans stress and aging. Aging Cell. 2017 Dec;16(6):1414-1424. (PubMed)

Krist DT, Foote PK, Statsyuk AV. UbFluor: A Fluorescent Thioester to Monitor HECT E3 Ligase Catalysis. Curr Protoc Chem Biol. 2017 Mar 2;9(1):11-37. (PubMed)

Labbadia J, Brielmann RM, Neto MF, Lin YF, Haynes CM, Morimoto RI. Mitochondrial Stress Restores the Heat Shock Response and Prevents Proteostasis Collapse during Aging. Cell Rep. 2017 Nov 7;21(6):1481-1494. (PubMed)

Lal-Nag M, McGee L, Guha R, Lengyel E, Kenny HA, Ferrer M. A High-Throughput Screening Model of the Tumor Microenvironment for Ovarian Cancer Cell Growth. SLAS Discov. 2017 Jun;22(5):494-506. (PubMed)

Landfors M, Johansen J, Aronsen JM, Vågbø CB, Doré LC, He C, Sjaastad I, Sætrom P, Fedorcsák P, Dahl JA, Aanes H, Fußer M, Klungland A. Genome-wide profiling of DNA 5-hydroxymethylcytosine during rat Sertoli cell maturation. Cell Discov. 2017 May 9;3:17013. eCollection 2017. (PubMed)

Laricchia KM, Zdraljevic S, Cook DE, Andersen EC. Natural Variation in the Distribution and Abundance of Transposable Elements Across the Caenorhabditis elegans Species. Mol Biol Evol. 2017 Sep 1;34(9):2187-2202. (PubMed)

Lee D, Yang H, Kim J, Brady S, Zdraljevic S, Zamanian M, Kim H, Paik YK, Kruglyak L, Andersen EC, Lee J. The genetic basis of natural variation in a phoretic behavior. Nat Commun. 2017 Aug 17;8(1):273. (PubMed)

Lee DK, Kee T, Liang Z, Hsiou D, Miya D, Wu B, Osawa E, Chow EK, Sung EC, Kang MK, Ho D. Clinical validation of a nanodiamond-embedded thermoplastic biomaterial. Proc Natl Acad Sci U S A. 2017 Nov 7;114(45):E9445-E9454. (PubMed)

Lee YCG, Ventura IM, Rice GR, Chen DY, Long M. Rapid evolution of gained essential developmental functions of a young gene via interactions with other essential genes. bioRxiv preprint first posted online Nov. 30, 2017. [Epub ahead of print] (www.biorxiv.org)

Leech KA, Hornby TG. High-intensity locomotor exercise increases brain-derived neurotrophic factor in individuals with incomplete spinal cord injury. J Neurotrauma. 2017 Mar 15;34(6):1240-1248. (PubMed)

LeMaster E, Shentu TP, Huang RT, Zhang C, Adamos C, Fancher I, Ng C, Christoforidis T, Subbaiah P, Eddington D, Cho M, Fang Y, Minshall R, Levitan I. Pro-atherogenic disturbed flow increases endothelial stiffness via enhanced CD36/Cav1- mediated oxLDL uptake. The FASEB Journal. April 2017 vol. 31 no. 1 Supplement 837.13. (fasebj.org)

Leypunskiy E, Lin J, Yoo H, Lee U, Dinner AR, Rust MJ. The cyanobacterial circadian clock follows midday in vivo and in vitro. Elife. 2017 Jul 7;6. (PubMed)

Li J, Labbadia J, Morimoto RI. Rethinking HSF1 in Stress, Development, and Organismal Health. Trends Cell Biol. 2017 Dec;27(12):895-905. (PubMed)

Li J, Wang L, Guo H, Shi L, Zhang K, Tang M, Hu S, Dong S, Liu Y, Wang T, Yu P, He X, Hu Z, Zhao J, Liu C, Sun ZS, Xia K. Targeted sequencing and functional analysis reveal brain-size-related genes and their networks in autism spectrum disorders. Mol Psychiatry. 2017 Sep;22(9):1282-1290. (PubMed)

Li L, Sheng Y, Li W, Hu C, Mittal N, Tohyama K, Seba A, Zhao YY, Ozer H, Zhu T, Qian Z. β-Catenin Is a Candidate Therapeutic Target for Myeloid Neoplasms with del(5q). Cancer Res. 2017 Aug 1;77(15):4116-4126. (PubMed)

Li Y, Almassalha LM, Chandler JE, Zhou X, Stypula-Cyrus YE, Hujsak KA, Roth EW, Bleher R, Subramanian H, Szleifer I, Dravid VP, Backman V. The effects of chemical fixation on the cellular nanostructure. Exp Cell Res. 2017 Sep 15;358(2):253-259. (PubMed)

Li Y, Urban A, Midura D, Simon HG, Wang QT. Proteomic characterization of epicardial-myocardial signaling reveals novel regulatory networks including a role for NF-κB in epicardial EMT. PLoS One. 2017 Mar 30;12(3):e0174563. eCollection 2017. (PubMed)

Lin Z, Hsu PJ, Xing X, Fang J, Lu Z, Zou Q, Zhang KJ, Zhang X, Zhou Y, Zhang T, Zhang Y, Song W, Jia G, Yang X, He C, Tong MH. Mettl3-/Mettl14-mediated mRNA N6-methyladenosine modulates murine spermatogenesis. Cell Res. 2017 Oct;27(10):1216-1230. (PubMed)

Liu S, Liu Y, Zhang Q, Wu J, Liang J, Yu S, Wei GH, White KP, Wang X. Systematic identification of regulatory variants associated with cancer risk. Genome Biol. 2017 Oct 23;18(1):194. (PubMed)

Liu S, Yeo DC, Wiraja C, Tey HL, Mrksich M, Xu C. Peptide delivery with poly(ethylene glycol) diacrylate microneedles through swelling effect. Bioeng Transl Med. 2017 Jul 14;2(3):258-267. (PubMed)

Liu SL, Sheng R, Jung JH, Wang L, Stec E, O’Connor MJ, Song S, Bikkavilli RK, Winn RA, Lee D, Baek K, Ueda K, Levitan I, Kim KP, Cho W. Orthogonal lipid sensors identify transbilayer asymmetry of plasma membrane cholesterol. Nat Chem Biol. 2017 Mar;13(3):268-274. (PubMed)

Liu X, Sun L, Gursel DB, Cheng C, Huang S, Rademaker AW, Khan SA, Yin J, Kiyokawa H. The non-canonical ubiquitin activating enzyme UBA6 suppresses epithelial-mesenchymal transition of mammary epithelial cells. Oncotarget. 2017 Sep 15;8(50):87480-87493. (PubMed)

Liu X, Zhao B, Sun L, Bhuripanyo K, Wang Y, Bi Y, Davuluri RV, Duong DM, Nanavati D, Yin J, Kiyokawa H. Orthogonal ubiquitin transfer identifies ubiquitination substrates under differential control by the two ubiquitin activating enzymes. Nat Commun. 2017 Jan 30;8:14286. (PubMed)

Liu Y, Yu S, Dhiman VK, Brunetti T, Eckart H, White KP. Functional assessment of human enhancer activities using whole-genome STARR-sequencing. Genome Biol. 2017 Nov 20;18(1):219. (PubMed)

Lyman KA, Han Y, Chetkovich DM. Animal models suggest the TRIP8b-HCN interaction is a therapeutic target for major depressive disorder. Expert Opin Ther Targets. 2017 Mar;21(3):235-237. (PubMed)

Lyman KA, Han Y, Heuermann RJ, Cheng X, Kurz JE, Lyman RE, Van Veldhoven PP, Chetkovich DM. Allostery between two binding sites in the ion channel subunit TRIP8b confers binding specificity to HCN channels. J Biol Chem. 2017 Oct 27;292(43):17718-17730. (PubMed)

Ma L, Zhao B, Chen K, Thomas A, Tuteja JH, He X, He C, White KP. Evolution of transcript modification by N6-methyladenosine in primates. Genome Res. 2017 Mar;27(3):385-392. (PubMed)

Magdaleno F, Blajszczak CC, Nieto N. Key Events Participating in the Pathogenesis of Alcoholic Liver Disease. Biomolecules. 2017 Jan 27;7(1). Review. (PubMed)

Magdaleno F, Ge X, Fey H, Lu Y, Gaskell H, Blajszczak CC, Aloman C, Fiel MI, Nieto N. Osteopontin deletion drives hematopoietic stem cell mobilization to the liver and increases hepatic iron contributing to alcoholic liver disease. Hepatol Commun. 2017 Nov 12;2(1):84-98. (PubMed)

Mandacaru SC, do Vale LH, Vahidi S, Xiao Y, Skinner OS, Ricart CA, Kelleher NL, de Sousa MV, Konermann L. Characterizing the Structure and Oligomerization of Major Royal Jelly Protein 1 (MRJP1) by Mass Spectrometry and Complementary Biophysical Tools. Biochemistry. 2017 Mar 21;56(11):1645-1655. (PubMed)

Manning A, Highland HM, Gasser J, (…) Bell GI, (…) Lindgren CM. A Low-Frequency Inactivating AKT2 Variant Enriched in the Finnish Population Is Associated With Fasting Insulin Levels and Type 2 Diabetes Risk. Diabetes. 2017 Jul;66(7):2019-2032. (PubMed)

Mansell R, Vemulkar T, Petit DCMC, Cheng Y, Murphy J, Lesniak MS, Cowburn RP. Magnetic particles with perpendicular anisotropy for mechanical cancer cell destruction. Sci Rep. 2017 Jun 26;7(1):4257. (PubMed)

Mascarenhas R, Le HV, Clevenger KD, Lehrer HJ, Ringe D, Kelleher NL, Silverman RB, Liu D. Selective Targeting by a Mechanism-based Inactivator against PLP-Dependent Enzymes: Mechanisms of Inactivation and Alternative Turnover. Biochemistry. 2017 Sep 19;56(37):4951-4961. (PubMed)

McCarthy DP, Yap JW, Harp CT, Song WK, Chen J, Pearson RM, Miller SD, Shea LD. An antigen-encapsulating nanoparticle platform for TH 1/17 immune tolerance therapy. Nanomedicine. 2017 Jan;13(1):191-200. (PubMed)

McConnell SC, Hernandez KM, Andrade J, de Jong JLO. Widespread Structural and Coding Sequence Variation Highlight Rapid and Ongoing Evolution of Zebrafish Immune Genes. NACIW 2017 Jun 13. (naciworkshop.com)

McFarland AP, Luo S, Ahmed-Qadri F, Zuck M, Thayer EF, Goo YA, Hybiske K, Tong L, Woodward JJ. Sensing of Bacterial Cyclic Dinucleotides by the Oxidoreductase RECON Promotes NF-κB Activation and Shapes a Proinflammatory Antibacterial State. Immunity. 2017 Mar 21;46(3):433-445. (PubMed)

McFarland CD, Yaglom JA, Wojtkowiak JW, Scott JG, Morse DL, Sherman MY, Mirny LA. The Damaging Effect of Passenger Mutations on Cancer Progression. Cancer Res. 2017 Sep 15;77(18):4763-4772. (PubMed)

McMahon KM, Scielzo C, Angeloni NL, Deiss-Yehiely E, Scarfo L, Ranghetti P, Ma S, Kaplan J, Barbaglio F, Gordon LI, Giles FJ, Thaxton CS, Ghia P. Synthetic high-density lipoproteins as targeted monotherapy for chronic lymphocytic leukemia. Oncotarget. 2017 Feb 14;8(7):11219-11227. (PubMed)

Mendoza AD, Woodruff TK, Wignall SM, O’Halloran TV. Zinc availability during germline development impacts embryo viability in Caenorhabditis elegans. Comp Biochem Physiol C Toxicol Pharmacol. 2017 Jan;191:194-202. (PubMed)

Mercader JM, Liao RG, Bell AD, (…) Bell GI, (…) Florez JC; SIGMA T2D Genetics Consortium. A Loss-of-Function Splice Acceptor Variant in IGF2 Is Protective for Type 2 Diabetes. Diabetes. 2017 Nov;66(11):2903-2914. (PubMed)

Meydan S, Klepacki D, Karthikeyan S, Margus T, Thomas P, Jones JE, Khan Y, Briggs J, Dinman JD, Vázquez-Laslop N, Mankin AS. Programmed Ribosomal Frameshifting Generates a Copper Transporter and a Copper Chaperone from the Same Gene. Mol Cell. 2017 Jan 19;65(2):207-219. (PubMed)

Morgan MAJ, Rickels RA, Collings CK, He X, Cao K, Herz HM, Cozzolino KA, Abshiru NA, Marshall SA, Rendleman EJ, Sze CC, Piunti A, Kelleher NL, Savas JN, Shilatifard A. A cryptic Tudor domain links BRWD2/PHIP to COMPASS-mediated histone H3K4 methylation. Genes Dev. 2017 Oct 1;31(19):2003-2014. (PubMed)

Mullen TJ, Wignall SM. Interplay between microtubule bundling and sorting factors ensures acentriolar spindle stability during C. elegans oocyte meiosis. PLoS Genet. 2017 Sep 14;13(9):e1006986. eCollection 2017 Sep. (PubMed)

Murmann AE, McMahon KM, Haluck-Kangas A, Ravindran N, Patel M, Law CY, Brockway S, Wei JJ, Thaxton CS, Peter ME. Induction of DISE in ovarian cancer cells in vivo. Oncotarget. 2017 Oct 4;8(49):84643-84658. (PubMed)

Ngô HM, Zhou Y, Lorenzi H, Wang K, Kim TK, Zhou Y, Bissati KE, Mui E, Fraczek L, Rajagopala SV, Roberts CW, Henriquez FL, Montpetit A, Blackwell JM, Jamieson SE, Wheeler K, Begeman IJ, Naranjo-Galvis C, Alliey-Rodriguez N, Davis RG, Soroceanu L, Cobbs C, Steindler DA, Boyer K, Noble AG, Swisher CN, Heydemann PT, Rabiah P, Withers S, Soteropoulos P, Hood L, McLeod R. Toxoplasma Modulates Signature Pathways of Human Epilepsy, Neurodegeneration & Cancer. Sci Rep. 2017 Sep 13;7(1):11496. (PubMed)

Nobutani K, Miyoshi J, Musch MW, Nishiyama M, Watanabe J, Kaneko A, Yamamoto M, Yoshida M, Kono T, Jeong H, Chang EB. Daikenchuto (TU-100) alters murine hepatic and intestinal drug metabolizing enzymes in an in vivo dietary model: effects of gender and withdrawal. Pharmacol Res Perspect. 2017 Oct;5(5). (PubMed)

Nora EP, Goloborodko A, Valton AL, Gibcus JH, Uebersohn A, Abdennur N, Dekker J, Mirny LA, Bruneau BG. Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization. Cell. 2017 May 18;169(5):930-944.e22. (PubMed)

Oakes PW, Wagner E, Brand CA, Probst D, Linke M, Schwarz US, Glotzer M, Gardel ML. Optogenetic control of RhoA reveals zyxin-mediated elasticity of stress fibres. Nat Commun. 2017 Jun 12;8:15817. (PubMed)

Oomen ME, Dekker J. Epigenetic characteristics of the mitotic chromosome in 1D and 3D. Crit Rev Biochem Mol Biol. 2017 Apr;52(2):185-204. Review. (PubMed)

Paduch M, Kossiakoff AA. Generating Conformation and Complex-Specific Synthetic Antibodies. Methods Mol Biol. 2017;1575:93-119. (PubMed)

Pandya M, Liu H, Dangaria SJ, Zhu W, Li LL, Pan S, Abufarwa M, Davis RG, Guggenheim S, Keiderling T, Luan X, Diekwisch TGH. Integrative Temporo-Spatial, Mineralogic, Spectroscopic, and Proteomic Analysis of Postnatal Enamel Development in Teeth with Limited Growth. Front Physiol. 2017 Oct 24;8:793. eCollection 2017. (PubMed)

Park J, Yang J, Wenzel AT, Ramachandran A, Lee WJ, Daniels JC, Kim J, Martinez-Escala E, Amankulor N, Pro B, Guitart J, Mendillo ML, Savas JN, Boggon TJ, Choi J. Genomic analysis of 220 CTCLs identifies a novel recurrent gain-of-function alteration in RLTPR (p.Q575E). Blood. 2017 Sep 21;130(12):1430-1440. (PubMed)

Patterson MT, Grossman RL. Detecting Spatial Patterns of Disease in Large Collections of Electronic Medical Records Using Neighbor-Based Bootstrapping. Big Data. 2017 Sep;5(3):213-224. (PubMed)

Peek CB, Levine DC, Cedernaes J, Taguchi A, Kobayashi Y, Tsai SJ, Bonar NA, McNulty MR, Ramsey KM, Bass J. Circadian Clock Interaction with HIF1α Mediates Oxygenic Metabolism and Anaerobic Glycolysis in Skeletal Muscle. Cell Metab. 2017 Jan 10;25(1):86-92. (PubMed)

Peisert S, Dart E, Barnett W, Balas E, Cuff J, Grossman RL, Berman A, Shankar A, Tierney B. The medical science DMZ: a network design pattern for data-intensive medical science. J Am Med Inform Assoc. 2017 Oct 6. [Epub ahead of print] (PubMed)

Pensa AV, Cinelli MA, Li H, Chreifi G, Mukherjee P, Roman LJ, Martásek P, Poulos TL, Silverman RB. Hydrophilic, Potent, and Selective 7-Substituted 2-Aminoquinolines as Improved Human Neuronal Nitric Oxide Synthase Inhibitors. J Med Chem. 2017 Aug 24;60(16):7146-7165. (PubMed)

Perez White BE, Ventrella R, Kaplan N, Cable CJ, Thomas PM, Getsios S. EphA2 proteomics in human keratinocytes reveals a novel association with afadin and epidermal tight junctions. J Cell Sci. 2017 Jan 1;130(1):111-118. (PubMed)

Piunti A, Hashizume R, Morgan MA, Bartom ET, Horbinski CM, Marshall SA, Rendleman EJ, Ma Q, Takahashi YH, Woodfin AR, Misharin AV, Abshiru NA, Lulla RR, Saratsis AM, Kelleher NL, James CD, Shilatifard A. Therapeutic targeting of polycomb and BET bromodomain proteins in diffuse intrinsic pontine gliomas. Nat Med. 2017 Apr;23(4):493-500. (PubMed)

Que EL, Duncan FE, Bayer AR, Philips SJ, Roth EW, Bleher R, Gleber SC, Vogt S, Woodruff TK, O’Halloran TV. Zinc sparks induce physiochemical changes in the egg zona pellucida that prevent polyspermy. Integr Biol (Camb). 2017 Feb 20;9(2):135-144. (PubMed)

Rai R, Ghosh AK, Eren M, Mackie AR, Levine DC, Kim SY, Cedernaes J, Ramirez V, Procissi D, Smith LH, Woodruff TK, Bass J, Vaughan DE. Downregulation of the Apelinergic Axis Accelerates Aging, whereas Its Systemic Restoration Improves the Mammalian Healthspan. Cell Rep. 2017 Nov 7;21(6):1471-1480. (PubMed)

Rammohan N, Holbrook RJ, Rotz MW, MacRenaris KW, Preslar AT, Carney CE, Reichova V, Meade TJ. Gd(III)-Gold Nanoconjugates Provide Remarkable Cell Labeling for High Field Magnetic Resonance Imaging. Bioconjug Chem. 2017 Jan 18;28(1):153-160. (PubMed)

Ray AM, Klomp JE, Collins KB, Karginov AV. Dissecting Kinase Effector Signaling Using the RapRTAP Methodology. Methods Mol Biol. 2017;1636:21-33. (PubMed)

Rayahin JE, Gemeinhart RA. Activation of Macrophages in Response to Biomaterials. Results Probl Cell Differ. 2017;62:317-351. (PubMed)

Rexius-Hall M, Rehman J, Eddington DT. A microfluidic oxygen gradient demonstrates differential activation of the hypoxia-regulated transcription factors HIF-1α and HIF-2α. Integrative Biology. 2017;9(9): 742-750. (PubMed)

Rickels R, Herz HM, Sze CC, Cao K, Morgan MA, Collings CK, Gause M, Takahashi YH, Wang L, Rendleman EJ, Marshall SA, Krueger A, Bartom ET, Piunti A, Smith ER, Abshiru NA, Kelleher NL, Dorsett D, Shilatifard A. Histone H3K4 monomethylation catalyzed by Trr and mammalian COMPASS-like proteins at enhancers is dispensable for development and viability. Nat Genet. 2017 Nov;49(11):1647-1653. (PubMed)

Rizk SS, Mukherjee S, Koide A, Koide S, Kossiakoff AA. Targeted rescue of cancer-associated IDH1 mutant activity using an engineered synthetic antibody. Sci Rep. 2017 Apr 3;7(1):556. (PubMed)

Roundtree IA, Luo GZ, Zhang Z, Wang X, Zhou T, Cui Y, Sha J, Huang X, Guerrero L, Xie P, He E, Shen B, He C. YTHDC1 mediates nuclear export of N6-methyladenosine methylated mRNAs. Elife. 2017 Oct 6;6. (PubMed)

Saal HP, Delhaye BP, Rayhaun BC, Bensmaia SJ. Simulating tactile signals from the whole hand with millisecond precision. Proc Natl Acad Sci U S A. 2017 Jul 11;114(28):E5693-E5702. (PubMed)

Sala AJ, Bott LC, Morimoto RI. Shaping proteostasis at the cellular, tissue, and organismal level. J Cell Biol. Review. 2017 May 1;216(5):1231-1241. (PubMed)

Sanders J, Boylan J, Francois-Vaughan H, Thomas PM, Sikora J, Abshiru N, Gruppuso P, Kelleher N. Rat Liver Repopulation by Transplanted Late Gestation Fetal Hepatocytes. The FASEB Journal. April 2017 vol. 31 no. 1 Supplement 531.12. (fasebj.org)

Schoborg JA, Hershewe J, Stark JC, Kightlinger W, Kath JE, Jaroentomeechai T, Natarajan A, DeLisa MP, Jewett MC. A cell-free platform for rapid synthesis and testing of active oligosaccharyltransferases. bioRxiv. June 5, 2017. (biorxiv.org)

Schreiner D, Savas JN, Herzog E, Brose N, de Wit J. Synapse biology in the ‘circuit-age’-paths toward molecular connectomics. Curr Opin Neurobiol. 2017 Feb;42:102-110. Review. (PubMed)

Schroeter ER, DeHart CJ, Cleland TP, Zheng W, Thomas PM, Kelleher NL, Bern M, Schweitzer MH. Expansion for the Brachylophosaurus canadensis Collagen I Sequence and Additional Evidence of the Preservation of Cretaceous Protein. J Proteome Res. 2017 Feb 3;16(2):920-932. (PubMed)

Scott AW, Garimella V, Calabrese CM, Mirkin CA. Universal Biotin-PEG-Linked Gold Nanoparticle Probes for the Simultaneous Detection of Nucleic Acids and Proteins. Bioconjug Chem. 2017 Jan 18;28(1):203-211. (PubMed)

Serebryannyy LA, Yemelyanov A, Gottardi CJ, de Lanerolle P. Nuclear α-catenin mediates the DNA damage response via β-catenin and nuclear actin. J Cell Sci. 2017 May 15;130(10):1717-1729. (PubMed)

Sheffield MEJ, Adoff MD, Dombeck DA. Increased Prevalence of Calcium Transients across the Dendritic Arbor during Place Field Formation. Neuron. 2017 Oct 11;96(2):490-504.e5. (PubMed)

Shen Y, Wu C, Uyeda TQP, Plaza GR, Liu B, Han Y, Lesniak MS, Cheng Y. Elongated Nanoparticle Aggregates in Cancer Cells for Mechanical Destruction with Low Frequency Rotating Magnetic Field. Theranostics. 2017 Apr 10;7(6):1735-1748. (PubMed)

Shi H, Deng HX, Gius D, Schumacker PT, James Surmeier D, Ma YC. Sirt3 Protects Dopaminergic Neurons from Mitochondrial Oxidative Stress. Hum Mol Genet. 2017 May 15;26(10):1915-1926. (PubMed)

Sita TL, Kouri FM, Hurley LA, Merkel TJ, Chalastanis A, May JL, Ghelfi ST, Cole LE, Cayton TC, Barnaby SN, Sprangers AJ, Savalia N, James CD, Lee A, Mirkin CA, Stegh AH. Dual bioluminescence and near-infrared fluorescence monitoring to evaluate spherical nucleic acid nanoconjugate activity in vivo. Proc Natl Acad Sci U S A. 2017 Apr 18;114(16):4129-4134. (PubMed)

Skinner OS, McAnally MO, Van Duyne RP, Schatz GC, Breuker K, Compton PD, Kelleher NL. Native Electron Capture Dissociation Maps to Iron-Binding Channels in Horse Spleen Ferritin. Anal Chem. 2017 Oct 17;89(20):10711-10716. (PubMed)

Sleep E, Cosgrove BD, McClendon MT, Preslar AT, Chen CH, Sangji MH, Pérez CMR, Haynes RD, Meade TJ, Blau HM, Stupp SI. Injectable biomimetic liquid crystalline scaffolds enhance muscle stem cell transplantation. Proc Natl Acad Sci U S A. 2017 Sep 19;114(38):E7919-E7928. (PubMed)

Sood V, Cajigas I, D’Urso A, Light WH, Brickner JH. Epigenetic Transcriptional Memory of GAL Genes Depends on Growth in Glucose and the Tup1 Transcription Factor in Saccharomyces cerevisiae. Genetics. 2017 Aug;206(4):1895-1907. (PubMed)

Spaeth JM, Gupte M, Perelis M, Yang YP, Cyphert H, Guo S, Liu JH, Guo M, Bass J, Magnuson MA, Wright C, Stein R. Defining a Novel Role for the Pdx1 Transcription Factor in Islet β-Cell Maturation and Proliferation During Weaning. Diabetes. 2017 Nov;66(11):2830-2839. (PubMed)

Spencer-Smith R, Koide A, Zhou Y, Eguchi RR, Sha F, Gajwani P, Santana D, Gupta A, Jacobs M, Herrero-Garcia E, Cobbert J, Lavoie H, Smith M, Rajakulendran T, Dowdell E, Okur MN, Dementieva I, Sicheri F, Therrien M, Hancock JF, Ikura M, Koide S, O’Bryan JP. Inhibition of RAS function through targeting an allosteric regulatory site. Nat Chem Biol. 2017 Jan;13(1):62-68. (PubMed)

Spencer-Smith R, Li L, Prasad S, Koide A, Koide S, O’Bryan JP. Targeting the α4-α5 interface of RAS results in multiple levels of inhibition. Small GTPases. 2017 Jul 10:0. [Epub ahead of print] (PubMed)

Stark AL, Madian AG, Williams SW, Chen V, Wing C, Hause RJ Jr, To LA, Gill AL, Myers JL, Gorsic LK, Ciaccio MF, White KP, Jones RB, Dolan ME. Identification of novel protein expression changes following cisplatin treatment and application to combination therapy. J Proteome Res. 2017 Nov 3;16(11):4227-4236. (PubMed)

Stephens AD, Banigan EJ, Adam SA, Goldman RD, Marko JF. Chromatin and lamin A determine two different mechanical response regimes of the cell nucleus. Mol Biol Cell. 2017 Jul 7;28(14):1984-1996. (PubMed)

Stocco C, Baumgarten SC, Armouti M, Fierro MA, Winston NJ, Scoccia B, Zamah AM. Genome-wide interactions between FSH and insulin-like growth factors in the regulation of human granulosa cell differentiation. Hum Reprod. 2017 Jan 31:1-10. (PubMed)

Støy J, Olsen J, Park SY, Gregersen S, Hjørringgaard CU, Bell GI. In vivo measurement and biological characterisation of the diabetes-associated mutant insulin p.R46Q (GlnB22-insulin). Diabetologia. 2017 Aug;60(8):1423-1431. (PubMed)

Stricker TP, Brown CD, Bandlamudi C, McNerney M, Kittler R, Montoya V, Peterson A, Grossman R, White KP. Robust stratification of breast cancer subtypes using differential patterns of transcript isoform expression. PLoS Genet. 2017 Mar 6;13(3):e1006589. (PubMed)

Strickland M, Ehrlich LS, Watanabe S, Khan M, Strub MP, Luan CH, Powell MD, Leis J, Tjandra N, Carter CA. Tsg101 chaperone function revealed by HIV-1 assembly inhibitors. Nat Commun. 2017 Nov 9;8(1):1391. (PubMed)

Sundaram KM, Zhang Y, Mitra AK, Kouadio JK, Gwin K, Kossiakoff AA, Roman BR, Lengyel E, Piccirilli J. Prolactin receptor-mediated internalization of imaging agents detects epithelial ovarian cancer with enhanced sensitivity and specificity. Cancer Res. 2017 Apr 1;77(7):1684-1696. (PubMed)

Suresh AK, Winberry JE, Versteeg C, Chowdhury R, Tomlinson T, Rosenow JM, Miller LE, Bensmaia SJ. Methodological considerations for a chronic neural interface with the cuneate nucleus of macaques. J Neurophysiol. 2017 Dec 1;118(6):3271-3281. (PubMed)

Taxy JB, Stadler WM, White KP. The molecular relationship among concurrent prostate cancer foci. J Clin Oncol. 2013 Feb 20;31(6_suppl):43. (PubMed)

Tietjen GT, Baylon JL, Kerr D, Gong Z, Henderson JM, Heffern CTR, Meron M, Lin B, Schlossman ML, Adams EJ, Tajkhorshid E, Lee KYC. Coupling X-Ray Reflectivity and In Silico Binding to Yield Dynamics of Membrane Recognition by Tim1. Biophys J. 2017 Oct 3;113(7):1505-1519. (PubMed)

Toby TK, Abecassis M, Kim K, Thomas PM, Fellers RT, LeDuc RD, Kelleher NL, Demetris J, Levitsky J. Proteoforms in Peripheral Blood Mononuclear Cells as Novel Rejection Biomarkers in Liver Transplant Recipients. Am J Transplant. 2017 Sep;17(9):2458-2467. (PubMed)

Traver G, Mont S, Gius D, Lawson WE, Ding GX, Sekhar KR, Freeman ML. Loss of Nrf2 promotes alveolar type 2 cell loss in irradiated, fibrotic lung. Free Radic Biol Med. 2017 Nov;112:578-586. (PubMed)

Tripathi A, Cho SJ, Chlipala GE, Green S, Jeong H. Fructose diet decreases APAP-induced hepatotoxicity in mice. The FASEB Journal. April 2017 vol. 31 no. 1 Supplement 822.12. (fasebj.org)

Tsang KM, Hyun JS, Cheng KT, Vargas M, Mehta D, Ushio-Fukai M, Zou L, Pajcini KV, Rehman J, Malik AB. Embryonic Stem Cell Differentiation to Functional Arterial Endothelial Cells through Sequential Activation of ETV2 and NOTCH1 Signaling by HIF1α. Stem Cell Reports. 2017 Sep 12;9(3):796-806. (PubMed)

Tylee DS, Hess JL, Quinn TP, Barve R, Huang H, Zhang-James Y, Chang J, Stamova BS, Sharp FR, Hertz-Picciotto I, Faraone SV, Kong SW, Glatt SJ. Blood transcriptomic comparison of individuals with and without autism spectrum disorder: A combined-samples mega-analysis. Am J Med Genet B Neuropsychiatr Genet. 2017 Apr;174(3):181-201. (PubMed)

Uzarski JS, DiVito MD, Wertheim JA, Miller WM. Essential design considerations for the resazurin reduction assay to noninvasively quantify cell expansion within perfused extracellular matrix scaffolds. Biomaterials. 2017 Jun;129:163-175. (PubMed)

Verma KD, Massing JO, Kamper SG, Carney CE, MacRenaris KW, Basilion JP, Meade TJ. Synthesis and evaluation of MR probes for targeted-reporter imaging. Chem Sci. 2017 Aug 1;8(8):5764-5768. (PubMed)

Villa SR, Mishra RK, Zapater JL, Priyadarshini M, Gilchrist A, Mancebo H, Schiltz GE, Layden BT. Homology modeling of FFA2 identifies novel agonists that potentiate insulin secretion. J Investig Med. 2017 Dec;65(8):1116-1124. (PubMed)

Volchenboum SL, Cox SM, Heath A, Resnick A, Cohn SL, Grossman R. Data Commons to Support Pediatric Cancer Research. Am Soc Clin Oncol Educ Book. 2017;37:746-752. (PubMed)

Wang J, Liao J, Zhang F, Song D, Lu M, Liu J, Wei Q, Tang S, Liu H, Fan J, Zou Y, Guo D, Huang J, Liu F, Ma C, Hu X, Li L, Qu X, Chen L, Weng Y, Lee M, J, He T, -C, Reid R, R, Zhang J. NEL-Like Molecule-1 (Nell1) Is Regulated by Bone Morphogenetic Protein 9 (BMP9) and Potentiates BMP9-Induced Osteogenic Differentiation at the Expense of Adipogenesis in Mesenchymal Stem Cells. Cell Physiol Biochem 2017;41:484-500. (PubMed)

Wang K, Gaitsch H, Poon H, Cox NJ, Rzhetsky A. Classification of common human diseases derived from shared genetic and environmental determinants. Nat Genet. 2017 Sep;49(9):1319-1325. (PubMed)

Wang L, Collings CK, Zhao Z, Cozzolino KA, Ma Q, Liang K, Marshall SA, Sze CC, Hashizume R, Savas JN, Shilatifard A. A cytoplasmic COMPASS is necessary for cell survival and triple-negative breast cancer pathogenesis by regulating metabolism. Genes Dev. 2017 Oct 15;31(20):2056-2066. (PubMed)

Wang L, Liang C, Wu J, Liu L, Tyo KEJ. Increased Processivity, Misincorporation, and Nucleotide Incorporation Efficiency in Sulfolobus solfataricus Dpo4 Thumb Domain Mutants. Appl Environ Microbiol. 2017 Aug 31;83(18). (PubMed)

Wang Y, Liu X, Zhou L, Duong D, Bhuripanyo K, Zhao B, Zhou H, Liu R, Bi Y, Kiyokawa H, Yin J. Identifying the ubiquitination targets of E6AP by orthogonal ubiquitin transfer. Nat Commun. 2017 Dec 20;8(1):2232. (PubMed)

Wang Z, Oppegard SC, Eddington DT, Cheng J. Effect of localized hypoxia on Drosophila embryo development. PLoS One. 2017 Sep 21;12(9):e0185267. eCollection 2017. (PubMed)

Wei C, Bajpai R, Sharma H, Heitmeier M, Jain AD, Matulis SM, Nooka AK, Mishra RK, Hruz PW, Schiltz GE, Shanmugam M. Development of GLUT4-selective antagonists for multiple myeloma therapy. Eur J Med Chem. 2017 Oct 20;139:573-586. (PubMed)

Wells GF, Shi Y, Laureni M, Rosenthal A, Szivák I, Weissbrodt DG, Joss A, Buergmann H, Johnson DR, Morgenroth E. Comparing the Resistance, Resilience, and Stability of Replicate Moving Bed Biofilm and Suspended Growth Combined Nitritation-Anammox Reactors. Environ Sci Technol. 2017 May 2;51(9):5108-5117. (PubMed)

Werner MS, Sullivan MA, Shah RN, Nadadur RD, Grzybowski AT, Galat V, Moskowitz IP, Ruthenburg AJ. Chromatin-enriched lncRNAs can act as cell-type specific activators of proximal gene transcription. Nat Struct Mol Biol. 2017 Jul;24(7):596-603. (PubMed)

Wheeler HE, Gamazon ER, Frisina RD, Perez-Cervantes C, El Charif O, Mapes B, Fossa SD, Feldman DR, Hamilton RJ, Vaughn DJ, Beard CJ, Fung C, Kollmannsberger C, Kim J, Mushiroda T, Kubo M, Ardeshir-Rouhani-Fard S, Einhorn LH, Cox NJ, Dolan ME, Travis LB. Variants in WFS1 and Other Mendelian Deafness Genes Are Associated with Cisplatin-Associated Ototoxicity. Clin Cancer Res. 2017 Jul 1;23(13):3325-3333. (PubMed)

Wildburger NC, Esparza TJ, LeDuc RD, Fellers RT, Thomas PM, Cairns NJ, Kelleher NL, Bateman RJ, Brody DL. Diversity of Amyloid-beta Proteoforms in the Alzheimer’s Disease Brain. Sci Rep. 2017 Aug 25;7(1):9520. (PubMed)

Wilson S, Fitzsimons M, Ferguson M, Heath A, Jensen M, Miller J, Murphy MW, Porter J, Sahni H, Staudt L, Tang Y, Wang Z, Yu C, Zhang J, Ferretti V, Grossman RL; GDC Project. Developing Cancer Informatics Applications and Tools Using the NCI Genomic Data Commons API. Cancer Res. 2017 Nov 1;77(21):e15-e18. (PubMed)

Wing C, Komatsu M, Delaney SM, Krause M, Wheeler HE, Dolan ME. Application of stem cell derived neuronal cells to evaluate neurotoxic chemotherapy. Stem Cell Res. 2017 Jul;22:79-88. (PubMed)

Witte K, Strickland D, Glotzer M. Cell cycle entry triggers a switch between two modes of Cdc42 activation during yeast polarization. Elife. 2017 Jul 6;6. (PubMed)

Wohlever ML, Mateja A, McGilvray PT, Day KJ, Keenan RJ. Msp1 Is a Membrane Protein Dislocase for Tail-Anchored Proteins. Mol Cell. 2017 Jul 20;67(2):194-202.e6. (PubMed)

Wolf Greenstein A, Majumdar N, Yang P, Subbaiah PV, Kineman RD, Cordoba-Chacon J. Hepatocyte-specific, PPARγ-regulated mechanisms to promote steatosis in adult mice. J Endocrinol. 2017 Jan;232(1):107-121. (PubMed)

Wu J, de Paz A, Zamft BM, Marblestone AH, Boyden ES, Kording KP, Tyo KEJ. DNA binding strength increases the processivity and activity of a Y-Family DNA polymerase. Sci Rep. 2017 Jul 6;7(1):4756. (PubMed)

Wu Y, Kumar A, Smith C, Ardiel E, Chandris P, Christensen R, Rey-Suarez I, Guo M, Vishwasrao HD, Chen J, Tang J, Upadhyaya A, La Riviere PJ, Shroff H. Reflective imaging improves resolution, speed, and collection efficiency in light sheet microscopy. Nat Commun. 2017 Nov 13;8(1):1452. (PubMed)

Xiao J, Chen S, Yi J, Zhang HF, Ameer GA. A Cooperative Copper Metal–Organic Framework. Hydrogel System Improves Wound Healing in Diabetes. Adv. Funct. Mater. 2017, 27, 1604872. (PubMed)

Xiao L, Priest MF, Nasenbeny J, Lu T, Kozorovitskiy Y. Biased Oxytocinergic Modulation of Midbrain Dopamine Systems. Neuron. 2017 Jul 19;95(2):368-384.e5. (PubMed)

Yang R, JA Broussard JA, Green KJ, HD Espinosa HD. Techniques to stimulate and interrogate cell-cell adhesion mechanics. Extreme Mechanics Letters. 2017. Available online 7 December 2017. [Epub ahead of print] (www.sciencedirect.com)

Yang X, Park SH, Chang HC, Shapiro JS, Vassilopoulos A, Sawicki KT, Chen C, Shang M, Burridge PW, Epting CL, Wilsbacher LD, Jenkitkasemwong S, Knutson M, Gius D, Ardehali H. Sirtuin 2 regulates cellular iron homeostasis via deacetylation of transcription factor NRF2. J Clin Invest. 2017 Apr 3;127(4):1505-1516. (PubMed)

Yang XH, Nadadur RD, Hilvering CR, Bianchi V, Werner M, Mazurek SR, Gadek M, Shen KM, Goldman JA, Tyan L, Bekeny J, Hall JM, Lee N, Perez-Cervantes C, Burnicka-Turek O, Poss KD, Weber CR, de Laat W, Ruthenburg AJ, Moskowitz IP. Transcription-factor-dependent enhancer transcription defines a gene regulatory network for cardiac rhythm. Elife. 2017 Dec 27;6. (PubMed)

Yao Y, Kong C, Yin L, Jain AD, Ratia K, Thatcher GR, Moore TW, Driver TG, Miller LW. Time-Gated Detection of Cystathionine γ-Lyase Activity and Inhibition with a Selective, Luminogenic Hydrogen Sulfide Sensor. Chemistry. 2017 Jan 18;23(4):752-756. (PubMed)

Yi J, Wang Y, Jiang Y, Jung IW, Liu W, De Andrade V, Xu R, Parameswaran R, Peters IR, Divan R, Xiao X, Sun T, Lee Y, Park WI, Tian B. 3D calcite heterostructures for dynamic and deformable mineralized matrices. Nat Commun. 2017 Sep 11;8(1):509. (PubMed)

Young DY, Pimentel MB, Lima LD, Custodio AF, Lo W, Chen SC, Teymour F, Papavasiliou G. Design and characterization of hydrogel nanoparticles with tunable network characteristics for sustained release of a VEGF-mimetic peptide. Biomater Sci. 2017 Sep 26;5(10):2079-2092. (PubMed)

Zayner JP, Mathes T, Sosnick TR, Kennis JTM. Helical Contributions Dominate Light Activated Conformational Change in AsLOV2. Preprint November 2017. [Epub ahead of print] (www.researchgate.net)

Zdraljevic S, Andersen EC. Natural diversity facilitates the discovery of conserved chemotherapeutic response mechanisms. Curr Opin Genet Dev. 2017 Sep 8;47:41-47. Review. (PubMed)

Zdraljevic S, Strand C, Seidel HS, Cook DE, Doench JG, Andersen EC. Natural variation in a single amino acid underlies cellular responses to topoisomerase II poisons. PLoS Genet. 2017 Jul 12;13(7):e1006891. eCollection 2017 Jul. (PubMed)

Zeng F, Chen Y, Remis J, Shekhar M, Phillips JC, Tajkhorshid E, Jin H. Structural basis of co-translational quality control by ArfA and RF2 bound to ribosome. Nature. 2017 Jan 26;541(7638):554-557. (PubMed)

Zha L, Jiang Y, Henke MT, Wilson MR, Wang JX, Kelleher NL, Balskus EP. Colibactin assembly line enzymes use S-adenosylmethionine to build a cyclopropane ring. Nat Chem Biol. 2017 Oct;13(10):1063-1065. (PubMed)

Zhang S, Yeap XY, DeBerge M, Naresh NK, Wang K, Jiang Z, Wilcox JE, White SM, Morrow JP, Burridge PW, Procissi D, Scott EA, Frazier W, Thorp EB. Acute CD47 Blockade During Ischemic Myocardial Reperfusion Enhances Phagocytosis-Associated Cardiac Repair. J Am Coll Cardiol Basic Trans Science. 2017;2(4):386-397. (PubMed)

Zhang T, Hsu FN, Xie XJ, Li X, Liu M, Gao X, Pei X, Liao Y, Du W, Ji JY. Reversal of hyperactive Wnt signaling-dependent adipocyte defects by peptide boronic acids. Proc Natl Acad Sci U S A. 2017 Sep 5;114(36):E7469-E7478. (PubMed)

Zhang Z, Tateda C, Jiang SC, Shrestha J, Jelenska J, Speed DJ, Greenberg J. A suite of receptor-like kinases and a putative mechano-sensitive channel are involved in autoimmunity and plasma membrane-based defenses in Arabidopsis. Mol Plant Microbe Interact. 2017 Feb;30(2):150-160. (PubMed)

Zhao BS, Wang X, Beadell AV, Lu Z, Shi H, Kuuspalu A, Ho RK, He C. m6A-dependent maternal mRNA clearance facilitates zebrafish maternal-to-zygotic transition. Nature. 2017 Feb 23;542(7642):475-478. (PubMed)

Zhong ZF, Yu HB, Wang CM, Qiang WA, Wang SP, Zhang JM, Yu H, Cui L, Wu T, Li DQ, Wang YT. Furanodiene Induces Extrinsic and Intrinsic Apoptosis in Doxorubicin-Resistant MCF-7 Breast Cancer Cells via NF-κB-Independent Mechanism. Front Pharmacol. 2017 Sep 14;8:648. (PubMed)

Zou X, Ratti BA, O’Brien JG, Lautenschlager SO, Gius DR, Bonini MG, Zhu Y. Manganese superoxide dismutase (SOD2): is there a center in the universe of mitochondrial redox signaling? J Bioenerg Biomembr. 2017 Aug;49(4):325-333. Review. (PubMed)

Zou X, Zhu Y, Park SH, Liu G, O’Brien J, Jiang H, Gius D. SIRT3-Mediated Dimerization of IDH2 Directs Cancer Cell Metabolism and Tumor Growth. Cancer Res. 2017 Aug 1;77(15):3990-3999. (PubMed)