CBC-Funded Publications 2013

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2013

Ahlf DR, Thomas PM, Kelleher NL. Developing top down proteomics to maximize proteome and sequence coverage from cells and tissues. Curr Opin Chem Biol. 2013 Oct;17(5):787-94. (PubMed)

Ajithkumar G, Yoo B, Goral DE, Hornsby PJ, Lin AL, Ladiwala U, Dravid VP, Sardar DK. Multimodal bioimaging using a rare earth doped Gd2O2S:Yb/Er phosphor with upconversion luminescence and magnetic resonance properties. J. Mater. Chem. B. 2013 1, 1561-1572. (rsc.org) 

Alvares K, Stern PH, Veis A. Dentin Phosphoprotein Binds Annexin 2 and is Involved in Calcium Transport in Rat kidney Ureteric Bud Cells. J Biol Chem. 2013 May 3;288(18):13036-45. (PubMed)

Antinone SE, Ghadge GD, Lam TT, Wang L, Roos RP, Green WN. Palmitoylation of superoxide dismutase 1 (SOD1) is increased for familial amyotrophic lateral sclerosis-linked SOD1 mutants. J Biol Chem. 2013 Jul 26;288(30):21606-17. (PubMed)

Atkinson IC, Liu G, Obeid N, Thulborn KR, Hwu W. Rapid computation of sodium bioscales using gpu-accelerated image reconstruction. Int. J. Imaging Syst. Technol. 2013 23: 29–35. (wiley.com)

Bakhshi FB, Mao M, Shajahan AN, Piegeler T, Chen Z, Chernaya O, Sharma T, Elliott WM, Szulcek R, Bogaard HJ, Comhair S, Erzurum S, van Nieuw Amerongen GP, Bonini MG, Minshall RD. Nitrosation-dependent caveolin 1 phosphorylation, ubiquitination, and degradation and its association with idiopathic pulmonary arterial hypertension. Pulmonary Circulation. 2013 Dec Vol. 3, No. 4:816-30. (jstor.or)

Barbolina MV, Liu Y, Gurler H, Kim M, Kajdacsy-Balla AA, Rooper L, Shepard J, Weiss M, Shea LD, Penzes P, Ravosa MJ, Stack MS. Matrix rigidity activates Wnt signaling through downregulation of Dickkopf-1. J Biol Chem. 2013 Jan 4;288(1):141-51. (PubMed)

Bass J. Forever (FGF) 21. Nat Med. 2013 Sep;19(9):1090-2. (PubMed)

Bazak R, Ressl J, Raha S, Doty C, Liu W, Wanzer B, Salam SA, Elwany S, Paunesku T, Woloschak GE. Cytotoxicity and DNA cleavage with core-shell nanocomposites functionalized by a KH domain DNA binding peptide. Nanoscale. 2013 Dec 7;5(23):11394-9. (PubMed)

Béguelin W, Popovic R, Teater M, Jiang Y, Bunting KL, Rosen M, Shen H, Yang SN, Wang L, Ezponda T, Martinez-Garcia E, Zhang H, Zheng Y, Verma SK, McCabe MT, Ott HM, Van Aller GS, Kruger RG, Liu Y, McHugh CF, Scott DW, Chung YR, Kelleher N, Shaknovich R, Creasy CL, Gascoyne RD, Wong KK, Cerchietti L, Levine RL, Abdel-Wahab O, Licht JD, Elemento O, Melnick AM. EZH2 is required for germinal center formation and somatic EZH2 mutations promote lymphoid transformation. Cancer Cell. 2013 May 13;23(5):677-92. (PubMed)

Bellis AD, Peñalver Bernabé B, Weiss MS, Shin S, Weng S, Broadbelt LJ, Shea LD. Dynamic transcription factor activity profiling in 2D and 3D cell cultures. Biotechnol Bioeng. 2013 Feb;110(2):563-72. (PubMed)

Belov ME, Damoc NE, Denisov E, Compton PD, Horning S, Makarov AA, Kelleher NL. From Protein Complexes to Subunit Backbone Fragments: a Novel Approach to Native Mass Spectrometry. Anal Chem. 2013 Dec 3;85(23):11163-73. (PubMed)

Bennett J, Baumgarten SC, Stocco C. GATA4 and GATA6 Silencing in Ovarian Granulosa Cells Affects Levels of mRNAs Involved in Steroidogenesis, Extracellular Structure Organization, IGF-I Activity, and Apoptosis. Endocrinology. 2013 Dec;154(12):4845-58. (PubMed)

Bhattarai N, Casillas G, Khanal S, Bahena D, Velazquez-Salazar JJ, Mejia S, Ponce A, Dravid VP, Whetten RL, Mariscal MM, Jose-Yacaman M. Structure and composition of Au/Co magneto-plasmonic nanoparticles. MRS Communications. 2013 3(3), 177-183. (cambridge.org)

Bissonnette ML, Kocherginsky M, Tretiakova M, Jimenez RE, Barkan GA, Mehta V, Sirintrapun SJ, Steinberg GD, White KP, Stricker T, Paner GP. The different morphologies of urachal adenocarcinoma do not discriminate genomically by micro-RNA expression profiling. Hum Pathol. 2013 Aug;44(8):1605-11. (PubMed)

Black KC, Yi J, Rivera JG, Zelasko-Leon DC, Messersmith PB. Biomimetic polydopamine coating on gold nanorods for biofunctionalization, imaging, and photothermal therapy. Proc. SPIE 8598, Bioinspired, Biointegrated, Bioengineered Photonic Devices. 2013 Apr 12:85980D. (spiedigitallibrary.org)

Black KC, Yi J, Rivera JG, Zelasko-Leon DC, Messersmith PB. Polydopamine-enabled surface functionalization of gold nanorods for cancer cell-targeted imaging and photothermal therapy. Nanomedicine (Lond). 2013 Jan;8(1):17-28. (PubMed)

Blair DR, Lyttle CS, Mortensen JM, Bearden CF, Jensen AB, Khiabanian H, Melamed R, Rabadan R, Bernstam EV, Brunak S, Jensen LJ, Nicolae D, Shah NH, Grossman RL, Cox NJ, White KP, Rzhetsky A. A nondegenerate code of deleterious variants in Mendelian loci contributes to complex disease risk. Cell. 2013 Sep 26;155(1):70-80. (PubMed)

Boland ML, Chourasia AH, Macleod KF. Mitochondrial Dysfunction in Cancer. Front. Oncol. 2013 3:292. (PubMed)

Brägelmann J, Dagogo-Jack I, El Dinali M, Stricker T, Brown CD, Zuo Z, Khattri A, Keck M, McNerney ME, Longnecker R, Bieging K, Kocherginsky M, Alexander K, Salgia R, Lingen MW, Vokes EE, White KP, Cohen EE, Seiwert TY. Oral cavity tumors in younger patients show a poor prognosis and do not contain viral RNA. Oral Oncol. 2013 Jun;49(6):525-33. (PubMed)

Briguglio JS, Kumar S, Turkewitz AP. Lysosomal sorting receptors are essential for secretory granule biogenesis in Tetrahymena. J Cell Biol. 2013 Nov 11;203(3):537-50. (PubMed)

Cabrera-Pardo JR, Chai DI, Kozmin SA. Silver-Promoted Benzannulations of Siloxy Alkynes with Pyridinium and Isoquinolinium Salts. Adv Synth Catal. 2013 Sep 16;355(13):2495-2498. (PubMed)

Cabrera-Pardo JR, Chai DI, Liu S, Mrksich M, Kozmin SA. Label-assisted mass spectrometry for the acceleration of reaction discovery and optimization. Nat Chem. 2013 May;5(5):423-7. (PubMed)

Cao Y, Liang J. Adaptively biased sequential importance sampling for rare events in reaction networks with comparison to exact solutions from finite buffer dCME method. J Chem Phys. 2013 Jul 14;139(2):025101. (PubMed)

Cao Y, Naveed H, Liang C, Liang J. Modeling spatial population dynamics of stem cell lineage in wound healing and cancerogenesis. Conf Proc IEEE Eng Med Biol Soc. 2013;2013:5550-3. (PubMed)

Cassidy JJ, Jha AR, Posadas DM, Giri R, Venken KJ, Ji J, Jiang H, Bellen HJ, White KP, Carthew RW. miR-9a Minimizes the Phenotypic Impact of Genomic Diversity by Buffering a Transcription Factor. Cell. 2013 Dec 19;155(7):1556-67. (PubMed)

Catherman AD, Durbin KR, Ahlf DR, Early BP, Fellers RT, Tran JC, Thomas PM, Kelleher NL. Large-scale top down proteomics of the human proteome: membrane proteins, mitochondria, and senescence. Mol Cell Proteomics. 2013 Dec;12(12):3465-73. (PubMed)

Catherman AD, Li M, Tran JC, Durbin KR, Compton PD, Early BP, Thomas PM, Kelleher NL. Top Down Proteomics of Human Membrane Proteins from Enriched Mitochondrial Fractions. Anal Chem. 2013 Feb 5;85(3):1880-8. (PubMed)

Chapman S, Dobrovolskaia M, Farahani K, Goodwin A, Joshie A, Lee H, Meade T, Pomper M, Ptak K, Rao J, Singh R, Sridhar S, Stern S, Wang A, Weaver JB, Woloschak G, Yang L. Nanoparticles for cancer imaging: The good, the bad, and the promise. Nano Today. 2013 8(5), 454-460. (science.direct) 

Chen J, Pompano RR, Santiago FW, Maillat L, Sciammas R, Sun T, Han H, Topham DJ, Chong AS, Collier JH. The use of self-adjuvanting nanofiber vaccines to elicit high-affinity B cell responses to peptide antigens without inflammation. Biomaterials. 2013 Nov;34(34):8776-85. (PubMed)

Chen Y, McClure RA, Zheng Y, Thomson RJ, Kelleher NL. Proteomics Guided Discovery of Flavopeptins: Anti-Proliferative Aldehydes Synthesized by a Reductase Domain-Containing Nonribosomal Peptide Synthetase. J Am Chem Soc. 2013 Jul 17;135(28):10449-56. (PubMed)

Chen Y, Unger M, Ntai I, McClure RA, Albright JC, Thomson RJ, Kelleher NL. Gobichelin A and B: Mixed-Ligand Siderophores Discovered Using Proteomics. Medchemcomm. 2013 Jan 1;4(1):233-238. (PubMed)

Choi CH, Hao L, Narayan SP, Auyeung E, Mirkin CA. Mechanism for the endocytosis of spherical nucleic acid nanoparticle conjugates. Proc Natl Acad Sci U S A. 2013 May 7;110(19):7625-30. (PubMed)

Chou SS, Kaehr B, Kim J, Foley BM, De M, Hopkins PE, Huang J, Brinker CJ, Dravid VP. Chemically exfoliated MoS2 as near-infrared photothermal agents. Angew Chem Int Ed Engl. 2013 Apr 8;52(15):4160-4. (PubMed)

Chow CR, Suzuki N, Kawamura T, Hamakubo T, Kozasa T. Modification of p115RhoGEF Ser330 regulates its RhoGEF activity. Cell Signal. 2013 Jun 29;25(11):2085-2092. (PubMed)

Cone JJ, Chartoff EH, Potter DN, Ebner SR, Roitman MF. Prolonged High Fat Diet Reduces Dopamine Reuptake without Altering DAT Gene Expression. PLoS One. 2013;8(3):e58251. (PubMed)

Crans DC, Meade TJ. Preface for the forum on metals in medicine and health: new opportunities and approaches to improving health. Inorg Chem. 2013 Nov 4;52(21):12181-3. (PubMed)

Curtis MW, Budyn E, Desai TA, Samarel AM, Russell B. Microdomain heterogeneity in 3D affects the mechanics of neonatal cardiac myocyte contraction. Biomech Model Mechanobiol. 2013 Jan;12(1):95-109. (PubMed)

Dai Y, Huang L. Understanding Tamoxifen Resistance of Breast Cancer Based on Integrative Bioinformatics Approaches. In: Breast Cancer Metastasis and Drug Resistance. Progress and Prospects (A. Ahmad, ed) Springer-Verlag. 2013, pp 249-260. (Springer)

Davis LK, Yu D, Keenan CL, (…), Cox NJ, Scharf JM. Partitioning the heritability of Tourette syndrome and obsessive compulsive disorder reveals differences in genetic architecture. PLoS Genet. 2013 Oct;9(10):e1003864. (PubMed)

Deng X, Weerapana E, Ulanovskaya O, Sun F, Liang H, Ji Q, Ye Y, Fu Y, Zhou L, Li J, Zhang H, Wang C, Alvarez S, Hicks LM, Lan L, Wu M, Cravatt BF, He C. Proteome-wide Quantification and Characterization of Oxidation-Sensitive Cysteines in Pathogenic Bacteria. Cell Host Microbe. 2013 Mar 13;13(3):358-70. (PubMed)

Di Cosmo C, Liao XH, Ye H, Ferrara AM, Weiss RE, Refetoff S, Dumitrescu AM. Mct8-deficient mice have increased energy expenditure and reduced fat mass that is abrogated by normalization of serum T3 levels. Endocrinology. 2013 Dec;154(12):4885-95. (PubMed)

Doroudian G, Curtis MW, Gang A, Russell B. Cyclic strain dominates over microtopography in regulating cytoskeletal and focal adhesion remodeling of human mesenchymal stem cells. Biochem Biophys Res Commun. 2013 Jan 18;430(3):1040-6. (PubMed)

Edwards DT, Ma Z, Meade TJ, Goldfarb D, Han S, Sherwin MS. Extending the distance range accessed with continuous wave EPR with Gd3+ spin probes at high magnetic fields. Phys Chem Chem Phys. 2013 Jul 21;15(27):11313-26. (PubMed)

Eichelsdoerfer DJ, Liao X, Cabezas MD, Morris W, Radha B, Brown KA, Giam LR, Braunschweig AB, Mirkin CA. Large-area molecular patterning with polymer pen lithography. Nat Protoc. 2013 Dec;8(12):2548-60. (PubMed)

Eisenberg JL, Beaumont KG, Takawira D, Hopkinson SB, Mrksich M, Scott Budinger GR, Jones JC. Plectin-containing, centrally-localized focal adhesions exert traction forces in primary lung epithelial cells. J Cell Sci. 2013 Aug 15;126(Pt 16):3746-55. (PubMed)

Evans BS, Zhao C, Gao J, Evans CM, Ju KS, Doroghazi JR, van der Donk WA, Kelleher NL, Metcalf WW. Discovery of the Antibiotic Phosacetamycin via a New Mass Spectrometry-Based Method for Phosphonic Acid Detection. ACS Chem Biol. 2013 May 17;8(5):908-13. (PubMed)

Ezponda T, Popovic R, Shah MY, Martinez-Garcia E, Zheng Y, Min DJ, Will C, Neri A, Kelleher NL, Yu J, Licht JD. The histone methyltransferase MMSET/WHSC1 activates TWIST1 to promote an epithelial-mesenchymal transition and invasive properties of prostate cancer. Oncogene. 2013 Jun 6;32(23):2882-90. (PubMed)

Falaschetti CA, Paunesku T, Kurepa J, Nanavati D, Chou SS, De M, Song M, Jang JT, Wu A, Dravid VP, Cheon J, Smalle J, Woloschak GE. Negatively charged metal oxide nanoparticles interact with the 20S proteasome and differentially modulate its biologic functional effects. ACS Nano. 2013 Sep 24;7(9):7759-72. (PubMed)

Farmer RL, Scheidt KA. A concise enantioselective synthesis and cytotoxic evaluation of the anticancer rotenoid deguelin enabled by a tandem Knoevenagel/conjugate addition/decarboxylation sequence. Chem. Sci. 2013 4, 3304-3309. (PubMed)

Fica SM, Tuttle N, Novak T, Li NS, Lu J, Koodathingal P, Dai Q, Staley JP, Piccirilli JA. RNA catalyses nuclear pre-mRNA splicing. Nature. 2013 Nov 14;503(7475):229-34. (PubMed)

Fitzpatrick CJ, Gopalakrishnan S, Cogan ES, Yager LM, Meyer PJ, Lovic V, Saunders BT, Parker CC, Gonzales NM, Aryee E, Flagel SB, Palmer AA, Robinson TE, Morrow JD. Variation in the Form of Pavlovian Conditioned Approach Behavior among Outbred Male Sprague-Dawley Rats from Different Vendors and Colonies: Sign-Tracking vs. Goal-Tracking. PLoS One. 2013 Oct 1;8(10):e75042. (PubMed)

Frattini V, Trifonov V, Chan JM, Castano A, Lia M, Abate F, Keir ST, Ji AX, Zoppoli P, Niola F, Danussi C, Dolgalev I, Porrati P, Pellegatta S, Heguy A, Gupta G, Pisapia DJ, Canoll P, Bruce JN, McLendon RE, Yan H, Aldape K, Finocchiaro G, Mikkelsen T, Privé GG, Bigner DD, Lasorella A, Rabadan R, Iavarone A. The integrated landscape of driver genomic alterations in glioblastoma. Nat Genet. 2013 Oct;45(10):1141-9. (PubMed)

Geslain R, Uddin S, Liu H, Jiang H, van Besien K, Pan T, Wickrema A. Distinct functions of erythropoietin and stem cell factor are linked to activation of mTOR kinase signaling pathway in human erythroid progenitors. Cytokine. 2013 Jan;61(1):329-35. (PubMed)

Gidalevitz T, Wang N, Deravaj T, Alexander-Floyd J, Morimoto RI. Natural genetic variation determines susceptibility to aggregation or toxicity in a C. elegans model for polyglutamine disease. BMC Biol. 2013 Sep 30;11:100. (PubMed)

Glaser JI, Zamft BM, Marblestone AH, Moffitt JR, Tyo K, Boyden ES, Church G, Kording KP. Statistical analysis of molecular signal recording. PLoS Comput Biol. 2013 Jul;9(7):e1003145. (PubMed)

Guisbert E, Czyz DM, Richter K, McMullen PD, Morimoto RI. Identification of a tissue-selective heat shock response regulatory network. PLoS Genet. 2013 Apr;9(4):e1003466. (PubMed)

Gulevich AV, Helan V, Wink DJ, Gevorgyan V. Pyridine group assisted addition of diazo-compounds to imines in the 3-CC reaction of 2-aminopyridines, aldehydes, and diazo-compounds. Org Lett. 2013 Feb 15;15(4):956-9. (PubMed)

Gülçür E, Thaqi M, Khaja F, Kuzmis A, Onyüksel H. Curcumin in VIP-targeted sterically stabilized phospholipid nanomicelles: a novel therapeutic approach for breast cancer and breast cancer stem cells. Drug Deliv Transl Res. 2013 Dec;3(6). (PubMed)

Hattori T, Taft JM, Swist KM, Luo H, Witt H, Slattery M, Koide A, Ruthenburg AJ, Krajewski K, Strahl BD, White KP, Farnham PJ, Zhao Y, Koide S. Recombinant antibodies to histone post-translational modifications. Nat Methods. 2013 Oct;10(10):992-5. (PubMed)

Heffern MC, Kurutz JW, Meade TJ. Spectroscopic Elucidation of the Inhibitory Mechanism of Cys2 His2 Zinc Finger Transcription Factors by Cobalt(III) Schiff Base Complexes. Chemistry. 2013 Dec 9;19(50):17043-53. (PubMed)

Heffern MC, Yamamoto N, Holbrook RJ, Eckermann AL, Meade TJ. Cobalt derivatives as promising therapeutic agents. Curr Opin Chem Biol. 2013 Apr;17(2):189-96. Review. (PubMed)

Hong BJ, Chipre AJ, Nguyen ST. Acid-degradable polymer-caged lipoplex (PCL) platform for siRNA delivery: facile cellular triggered release of siRNA. J Am Chem Soc. 2013 Nov 27;135(47):17655-8. (PubMed)

Hong BJ, Swindell EP, Macrenaris KW, Hankins PL, Chipre AJ, Mastarone DJ, Ahn RW, Meade TJ, O’Halloran TV, Nguyen ST. pH-Responsive Theranostic Polymer-Caged Nanobins (PCNs): Enhanced Cytotoxicity and T 1 MRI Contrast by Her2-Targeting. Part Part Syst Charact. 2013 Sep;30(9):770-774.
(PubMed)

Hu L, Wang C, Lee S, Winans RE, Marks LD, Poeppelmeier KR. SrTiO3 Nanocuboids from a Lamellar Microemulsion. Chem. Mater. 2013 Mar;25(3):378-384. (acs.org)

Huang H, Jiang X, Li Z, Li Y, Song CX, He C, Sun M, Chen P, Gurbuxani S, Wang J, Hong GM, Elkahloun AG, Arnovitz S, Wang J, Szulwach K, Lin L, Street C, Wunderlich M, Dawlaty M, Neilly MB, Jaenisch R, Yang FC, Mulloy JC, Jin P, Liu PP, Rowley JD, Xu M, He C, Chen J. TET1 plays an essential oncogenic role in MLL-rearranged leukemia. Proc Natl Acad Sci U S A. 2013 Jul 16;110(29):11994-9. (PubMed)

Hudalla GA, Modica JA, Tian YF, Rudra JS, Chong AS, Sun T, Mrksich M, Collier JH. A Self-Adjuvanting Supramolecular Vaccine Carrying a Folded Protein Antigen. Adv Healthc Mater. 2013 Aug;2(8):1114-9. (PubMed)

Hung AH, Duch MC, Parigi G, Rotz MW, Manus LM, Mastarone DJ, Dam KT, Gits CC, Macrenaris KW, Luchinat C, Hersam MC, Meade TJ. Mechanisms of Gadographene-Mediated Proton Spin Relaxation. J Phys Chem C Nanomater Interfaces. 2013 Aug 8;117(31). (PubMed)

Hung AH, Liang T, Sukerkar PA, Meade TJ. High dynamic range processing for magnetic resonance imaging. PLoS One. 2013 Nov 8;8(11):e77883.
(PubMed)

Hunter MP, Russo A, O’Bryan JP. Emerging Roles for Intersectin (ITSN) in Regulating Signaling and Disease Pathways. Int. J. Mol. Sci. 2013 Apr 10:14, 7829-7852. (PubMed)

Jensen SA, Day ES, Ko CH, Hurley LA, Luciano JP, Kouri FM, Merkel TJ, Luthi AJ, Patel PC, Cutler JI, Daniel WL, Scott AW, Rotz MW, Meade TJ, Giljohann DA, Mirkin CA, Stegh AH. Spherical nucleic acid nanoparticle conjugates as an RNAi-based therapy for glioblastoma. Sci Transl Med. 2013 Oct 30;5(209):209ra152. (PubMed)

Ji Q, Zhang L, Jones MB, Sun F, Deng X, Liang H, Cho H, Brugarolas P, Gao YN, Peterson SN, Lan L, Bae T, He C. Molecular mechanism of quinone signaling mediated through S-quinonization of a YodB family repressor QsrR. Proc Natl Acad Sci U S A. 2013 Mar 26;110(13):5010-5. (PubMed)

Jiang L, Tang Y, Liow C, Wu J, Sun Y, Jiang Y, Dong Z, Li S, Dravid VP, Chen X. Synthesis of fivefold stellate polyhedral gold nanoparticles with {110}-facets via a seed-mediated growth method. Small. 2013 Mar 11;9(5):705-10. (PubMed)

Jiang L, Zhang J, Wang JJ, Wang L, Zhang L, Li G, Yang X, Ma X, Sun X, Cai J, Zhang J, Huang X, Yu M, Wang X, Liu F, Wu CI, He C, Zhang B, Ci W, Liu J. Sperm, but not oocyte, DNA methylome is inherited by zebrafish early embryos. Cell. 2013 May 9;153(4):773-84. (PubMed)

Jiang ZF, Xia F, Johnson KW, Brown CD, Bartom E, Tuteja JH, Stevens R, Grossman RL, Brumin M, White KP, Ghanim M. Comparison of the genome sequences of “Candidatus Portiera aleyrodidarum” primary endosymbionts of the whitefly Bemisia tabaci B and Q biotypes. Appl Environ Microbiol. 2013 Mar;79(5):1757-9. (PubMed)

Joshi HM, De M, Richter F, He JQ, Prasad PV, Dravid VP. Effect of silica shell thickness of Fe3O4-SiOx core-shell nanostructures on MRI contrast. Journal of Nanoparticle Research. 2013 15(3), 1-5. (springer.com)

Kang S, Cooper G, Dunne SF, Luan CH, Surmeier JD, Silverman RB. Antagonism of L-type Ca2+ channels CaV1.3 and CaV1.2 by 1,4-dihydropyrimidines and 4H-pyrans as dihydropyridine mimics. Bioorg Med Chem. 2013 Jul 15;21(14):4365-73. (PubMed)

Kang S, Cooper G, Dunne SF, Luan CH, Surmeier DJ, Silverman RB. Structure-activity relationship of N,N’-disubstituted pyrimidinetriones as Ca(V)1.3 calcium channel-selective antagonists for Parkinson’s disease. J Med Chem. 2013 Jun 13;56(11):4786-97. Erratum in: J Med Chem. 2013 Jul 25;56(14):5984. (PubMed)

Kelleher NL, Paša-Tolić L. 25th ASMS Sanibel Conference on Top Down Mass Spectrometry. J Am Soc Mass Spectrom. 2013 Jul;24(7):983-5. (PubMed)

Kelleher NL. Status of Mass Spectrometry-Based Proteomics and Metabolomics in Basic and Translational Research. Biochemistry. 2013 Jun 4;52(22):3794-6. (PubMed)

Kenter AL, Wuerffel R, Kumar S, Grigera F. Genomic Architecture may Influence Recurrent Chromosomal Translocation Frequency in the Igh Locus. Front Immunol. 2013 Dec 30;4:500. (PubMed)

Khaja F, Kuzmis A, Onyuksel H. A Novel Targeted siRNA-Nanomedicine for Liver Fibrosis, 40th Annual CRS conference proceedings. 2013. (controlledreleasesociety.org)

Kim AR, Martinez C, Ionides J, Ramos AF, Ludwig MZ, Ogawa N, Sharp DH, Reinitz J. Rearrangements of 2.5 kilobases of noncoding DNA from the Drosophila even-skipped locus define predictive rules of genomic cis-regulatory logic. PLoS Genet. 2013;9(2):e1003243. (PubMed)

Kirstein-Miles J, Scior A, Deuerling E, Morimoto RI. The nascent polypeptide-associated complex is a key regulator of proteostasis. EMBO J. 2013 May 15;32(10):1451-68. (PubMed)

Kittler R, Zhou J, Hua S, Ma L, Liu Y, Pendleton E, Cheng C, Gerstein M, White KP. A Comprehensive Nuclear Receptor Network for Breast Cancer Cells. Cell Rep. 2013 Feb 21;3(2):538-51. (PubMed)

Kolker E, Özdemir V, Martens L, (…) Grossman R, (…) Yandl G. Toward More Transparent and Reproducible Omics Studies Through a Common Metadata Checklist and Data Publications. Big Data. 2013 Dec;1(4):196-201. (PubMed)

Krishna SN, Luan CH, Mishra RK, Xu L, Scheidt KA, Anderson WF, Bergan RC. A Fluorescence-Based Thermal Shift Assay Identifies Inhibitors of Mitogen Activated Protein Kinase Kinase 4. PLoS ONE 2013 Dec 5;8(12):e81504. Erratum in: PLoS One. 2013;8(12). (PubMed); correction: (PubMed)

Kumar S, Wuerffel R, Achour I, Lajoie B, Sen R, Dekker J, Feeney AJ, Kenter AL. Flexible ordering of antibody class switch and V(D)J joining during B-cell ontogeny. Genes Dev. 2013 Nov 15;27(22):2439-44. (PubMed)

Kuznetsov A, Onishi Y, Inamoto Y, Gevorgyan V. Fused heteroaromatic dihydrosiloles: synthesis and double-fold modification. Org Lett. 2013 May 17;15(10):2498-501. (PubMed)

Lasarre B, Aggarwal C, Federle MJ. Antagonistic Rgg Regulators Mediate Quorum Sensing via Competitive DNA Binding in Streptococcus pyogenes. MBio. 2013 Jan 2;3(6). (PubMed)

Lee JE, Zamdborg L, Southey B, Atkins N, Mitchell JW, Li M, Gillette MU, Kelleher NL, Sweedler JV. Quantitative Peptidomics for Discovery of Circadian-Related Peptides from the Rat Suprachiasmatic Nucleus. J Proteome Res. 2013 Feb 1;12(2):585-93. (PubMed)

Lee SM, Karrison TG, Cox NJ, Im HK. Quantitative allelic test–a fast test for very large association studies. Genet Epidemiol. 2013 Dec;37(8):831-9. (PubMed)

Lee SM, Nguyen ST. Smart Nanoscale Drug Delivery Platforms from Stimuli-Responsive Polymers and Liposomes. Macromolecules. 2013 46(23), 9169–9180. (asc.org)

Li M, Durbin KR, Sweet SM, Tipton JD, Zheng Y, Kelleher NL. Oncogene Induced Cellular Senescence Elicits an Anti-Warburg Effect. Proteomics. 2013 Sep;13(17):2585-96. (PubMed)

Liao X, Brown KA, Schmucker AL, Liu G, He S, Shim W, Mirkin CA. Desktop nanofabrication with massively multiplexed beam pen lithography. Nat Commun. 2013 Jul 19;4:2103. (PubMed)

Light SH, Krishna SN, Bergan RC, Lavie A, Anderson WF. Crystal structure of a type II dehydroquinate dehydratase-like protein from Bifidobacterium longum. J Struct Funct Genomics. 2013 Mar;14(1):25-30. (PubMed)

Lim C, Allada R. ATAXIN-2 activates PERIOD translation to sustain circadian rhythms in Drosophila. Science. 2013 May 17;340(6134):875-9. (PubMed)

Lin JY, Stuparu AD, Huntington MD, Mrksich M, Odom T. Nanopatterned Substrates Increase Surface Sensitivity for Real-Time Biosensing. J. Phys. Chem. C. 2013 117, 5286-5292. (asc.org)

Lister R, Mukamel EA, Nery JR, Urich M, Puddifoot CA, Johnson ND, Lucero J, Huang Y, Dwork AJ, Schultz MD, Yu M, Tonti-Filippini J, Heyn H, Hu S, Wu JC, Rao A, Esteller M, He C, Haghighi FG, Sejnowski TJ, Behrens MM, Ecker JR. Global epigenomic reconfiguration during mammalian brain development. Science. 2013 Aug 9;341(6146):1237905. (PubMed)

Liu G, Eichelsdoerfer DJ, Rasin B, Zhou Y, Brown KA, Liao X, Mirkin CA. Delineating the pathways for the site-directed synthesis of individual nanoparticles on surfaces. Proc Natl Acad Sci U S A. 2013 Jan 15;110(3):887-91. (PubMed)

Liu G, Zhou Y, Banga RS, Boya R, Brown KA, Chipre AJ, Nguyen ST, Mirkin CA. The role of viscosity on polymer ink transport in dip-pen nanolithography. Chem. Sci. 2013 4, 2093-2099. (PubMed)

Liu S, Cheng C. Alternative RNA splicing and cancer. Wiley Interdiscip Rev RNA. 2013 Sep-Oct;4(5):547-66. Review. (PubMed)

Liu S, Scotti JS, Kozmin SA. Emulating the logic of monoterpenoid alkaloid biogenesis to access a skeletally diverse chemical library. J Org Chem. 2013 Sep 6;78(17):8645-54. (PubMed)

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