CBC-Funded Publications 2007

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2007

D’Souza M, Glass EM, Syed MH, Zhang Y, Rodriguez A, Maltsev N, Galperin MY. Links Sentra: a database of signal transduction proteins for comparative genome analysis. Nucleic Acids Res. 2007 Jan;35(Database issue):D271-3. (PubMed)

Dai Q, Fong R, Saikia M, Stephenson D, Yu YT, Pan T, Piccirilli JA. Identification of recognition residues for ligation-based detection and quantitation of pseudouridine and N6-methyladenosine. Nucleic Acids Res. 2007;35(18):6322-9. (PubMed)

Eggler AL, Luo Y, van Breemen RB, Mesecar AD. Identification of the highly reactive cysteine 151 in the chemopreventive agent-sensor Keap1 protein is method-dependent. Chem Res Toxicol. 2007 Dec;20(12):1878-84. (PubMed)

Fajans SS, Bell GI. Macrosomia and neonatal hypoglycaemia in RW pedigree subjects with a mutation (Q268X) in the gene encoding hepatocyte nuclear factor 4alpha (HNF4A). Diabetologia. 2007 Dec;50(12):2600-1. (PubMed)

Fang F, Grossman R, Liu X. An Algorithm for Assigning Unique Keys to Metabolic Pathways. BIBM 2007. IEEE International Conference on Bioinformatics and Biomedicine. pp 374-382. (IEE Xplore)

Hayes MG, Pluzhnikov A, Miyake K, Sun Y, Ng MC, Roe CA, Below JE, Nicolae RI, Konkashbaev A, Bell GI, Cox NJ, Hanis CL. Identification of type 2 diabetes genes in Mexican Americans through genome-wide association studies. Diabetes. 2007 Dec;56(12):3033-44. (PubMed)

Hooper SD, Boué S, Krause R, Jensen LJ, Mason CE, Ghanim M, White KP, Furlong EE, Bork P. Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis. Mol Syst Biol. 2007;3:72. (PubMed)

Kohsaka A, Laposky AD, Ramsey KM, Estrada C, Joshu C, Kobayashi Y, Turek FW, Bass J. High-fat diet disrupts behavioral and molecular circadian rhythms in mice. Cell Metab. 2007 Nov;6(5):414-21. (PubMed)

Liu D, Guo J, Luo Y, Broderick DJ, Schimerlik MI, Pezzuto JM, van Breemen RB. Screening for ligands of human retinoid X receptor-alpha using ultrafiltration mass spectrometry. Anal Chem. 2007 Dec 15;79(24):9398-402. (PubMed)

Long F, McElheny D, Jiang S, Park S, Caffrey MS, Fung LW. Conformational change of erythroid alpha-spectrin at the tetramerization site upon binding beta-spectrin. Protein Sci. 2007 Nov;16(11):2519-30. (PubMed)

Luo Y, Eggler AL, Liu D, Liu G, Mesecar AD, van Breemen RB. Sites of alkylation of human Keap1 by natural chemoprevention agents. J Am Soc Mass Spectrom. 2007 Dec;18(12):2226-32. (PubMed)

Maier TM, Casey MS, Becker RH, Dorsey CW, Glass EM, Maltsev N, Zahrt TC, Frank DW. Identification of Francisella tularensis Himar1-Based Transposon Mutants Defective for Replication in Macrophages. Infect Immun, 2007 75(11): 5376-89. (PubMed)

Mody PD, Cannon JL, Bandukwala HS, Blaine KM, Schilling AB, Swier K, Sperling AI. Signaling through CD43 regulates CD4 T-cell trafficking. Blood. 2007 Oct 15;110(8):2974-82. (PubMed)

Murphy SC, Fernandez-Pol S, Chung PH, Prasanna Murthy SN, Milne SB, Salomao M, Brown HA, Lomasney JW, Mohandas N, Haldar K. Cytoplasmic remodeling of erythrocyte raft lipids during infection by the human malaria parasite Plasmodium falciparum. Blood. 2007 Sep 15;110(6):2132-9. (PubMed)

Rodriguez AA, Bompada T, Syed M, Shah PK, Maltsev N. Evolutionary Analysis of Enzymes Using Chisel. Bioinformatics, 2007 13: 1-8. (PubMed)

Sheahan KL, Cordero CL, Satchell KJ. Autoprocessing of the Vibrio cholerae RTX toxin by the cysteine protease domain. EMBO J., 2007 16; 26(10): 2552-61. (PubMed)

Snyder JB, Nelson ME, Burdick JW, Maciver MA. Omnidirectional sensory and motor volumes in electric fish. PLoS Biol. 2007 Nov;5(11):e301. (PubMed)

Støy J, Edghill EL, Flanagan SE, Ye H, Paz VP, Pluzhnikov A, Below JE, Hayes MG, Cox NJ, Lipkind GM, Lipton RB, Greeley SA, Patch AM, Ellard S, Steiner DF, Hattersley AT, Philipson LH, Bell GI; Neonatal Diabetes International Collaborative Group. Insulin gene mutations as a cause of permanent neonatal diabetes. Proc Natl Acad Sci U S A. 2007 Sep 18;104(38):15040-4. (PubMed)

Sulakhe D, D’Souza M, Syed M, Alexis RA, Zhang Y, Glass EM, Romine MF, Maltsev N. GNARE: a grid-based server for the analysis of user submitted Genomes. Nucleic Acids Research, 2007, 1–6.

Vahebi S, Ota A, Li M, Warren CM, de Tombe PP, Wang Y, Solaro RJ. p38-MAPK induced dephosphorylation of alpha-tropomyosin is associated with depression of myocardial sarcomeric tension and ATPase activity. Circ Res. 2007 Feb 16;100(3):408-15. (PubMed)

Xiao L, Zhao Q, Du Y, Yuan C, Solaro RJ, Buttrick PM. PKC-epsilon increases phosphorylation of the cardiac myosin binding protein C at serine 302 both in vitro and in vivo. Biochemistry. 2007 Jun 12;46(23):7054-61. (PubMed)

Zhang Y, Brovkovych V, Brovkovych S, Tan F, Lee BS, Sharma T, Skidgel RA. Dynamic receptor-dependent activation of inducible nitric-oxide synthase by ERK-mediated phosphorylation of Ser745. J Biol Chem. 2007 Nov 2;282(44):32453-61. (PubMed)

Zhou D, Xue J, Chen J, Morcillo P, Lambert JD, White KP, Haddad GG. Experimental selection for Drosophila survival in extremely low O2 environment. PLoS One. 2007 May 30;2(5):e490. (PubMed)